View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2514_low_18 (Length: 237)
Name: NF2514_low_18
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_low_18 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 132355 - 132135
Alignment:
| Q |
1 |
ctactatatcctattgtgaggt-gatatgcaggtattaaaaggtagaaatatactaaaaataattgtaaggtttgatgaaataaaaatatagaagtgaaa |
99 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||| |
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| T |
132355 |
ctactatatcctattgtgaggttgatatgcaggcattaaaaggtagaaatatattaaa--taattttaaggtttgatgaaatgaaaatatagaagtgaaa |
132258 |
T |
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| Q |
100 |
gcttaaaatgtagattaatcttaatagaacatagagaattgatgaattggatacaacataattaaacaaacctgacagaaattaaaatatagtgatatta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
132257 |
gcttaaaatgtagattaatcttaatagaacatagagaattgatgaactgagtacaacataattaaacaaacttgacaggaattaaaatatagtgatatta |
132158 |
T |
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| Q |
200 |
aacacactacatagtgaagatta |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
132157 |
aacacactacatagtgaagatta |
132135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23963189 - 23963406
Alignment:
| Q |
1 |
ctactatatcctattgtgaggtgatatgcaggtattaaaaggtagaaatatactaaaaataattgtaaggtttgatgaaataaaaatatagaagtgaaag |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
23963189 |
ctactatatcctattg--aggtgatatgcaggtattaaaaggtagaaatatactaaa--taattgtaaggtttgatgaaatgaaaatatagaagtgaaaa |
23963284 |
T |
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| Q |
101 |
cttaaaatgtagattaatcttaatagaacatagagaattgatgaattggatacaacataattaaacaaacctgacagaaattaaaatatagtgatattaa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
23963285 |
cttaaaatgtagattaatctcaatagaacatagagaattgatgaactgagtacaacataattaaacaaacctgacaggaattaaagtatagtgatattaa |
23963384 |
T |
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| Q |
201 |
acacactacatagtgaagatta |
222 |
Q |
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||||||||||| |||||||||| |
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| T |
23963385 |
acacactacatggtgaagatta |
23963406 |
T |
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