View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2514_low_2 (Length: 780)
Name: NF2514_low_2
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_low_2 |
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| [»] scaffold1113 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 505; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 21 - 541
Target Start/End: Complemental strand, 32684804 - 32684284
Alignment:
| Q |
21 |
agcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatgtttaaggctgaatggaaagta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684804 |
agcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatgtttaaggctgaatggaaagta |
32684705 |
T |
|
| Q |
121 |
tgaagaaaatcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatcttatatagttgtagttttcgtctat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684704 |
tgaagaaaatcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatcttatatagttgtagttttcgtctat |
32684605 |
T |
|
| Q |
221 |
gcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactgagatgtaagtttctttgccaactgt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684604 |
gcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactgagatgtaagtttctttgccaactgt |
32684505 |
T |
|
| Q |
321 |
tttatgatgtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatagatgttatgtaaatgacactttgactatc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32684504 |
tttatgatgtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaataatatagatgttatgtaaatgacactttgactatc |
32684405 |
T |
|
| Q |
421 |
acaatataacgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctctttatattcagccttggatttcagcgcacaattcaactg |
520 |
Q |
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| T |
32684404 |
aaaatataacgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctctttatattcagccttggatttcagcgcacaattcagctg |
32684305 |
T |
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| Q |
521 |
ccagatctgctggtttagagg |
541 |
Q |
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||||||||||||||||||||| |
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| T |
32684304 |
ccagatctgctggtttagagg |
32684284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 97 - 484
Target Start/End: Original strand, 32559715 - 32560082
Alignment:
| Q |
97 |
atgtttaaggctgaatggaaagtatgaagaaaatcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatct |
196 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32559715 |
atgtttaaggctgaatgaaaagtatgaagaaaatcagaatagagaatgaacaagaaagaa--------------------aatgatacactgatgcatct |
32559794 |
T |
|
| Q |
197 |
tatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32559795 |
tatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctctaactaagtatactga |
32559894 |
T |
|
| Q |
297 |
gatgtaagtttctttgccaactgttttatgatgtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatagatgt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32559895 |
gatgtaagtttctttgccaactgttttatgatgtaacttattcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatgcatgt |
32559994 |
T |
|
| Q |
397 |
tatgtaaatgacactttgactatcacaatataacgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctcttt |
484 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559995 |
tatgtaaatgacactttcactatcacaatataacgcaacgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctcttt |
32560082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 599 - 748
Target Start/End: Complemental strand, 32684226 - 32684077
Alignment:
| Q |
599 |
tagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctacaatttatcttcgaccaaatttgagat |
698 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684226 |
tagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctacaatttatcttcgaccaaatttgagat |
32684127 |
T |
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| Q |
699 |
tcttacaatgatatccacacaccttcatgtcaaattcccctatctctgat |
748 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32684126 |
tcttacaatgatatccacacaccttcatgtcaaatttccctatctctgat |
32684077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 447 - 541
Target Start/End: Complemental strand, 32692276 - 32692182
Alignment:
| Q |
447 |
cttcgaagttctttacggtcattgtcaacctcctctttatattcagccttggatttcagcgcacaattcaactgccagatctgctggtttagagg |
541 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
32692276 |
cttcaaagttctttacggtcattgtcaacctcctctttatattcaaccttgcatttcagcacacaattcagctgccagatctgctggtttagagg |
32692182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 32559616 - 32559694
Alignment:
| Q |
21 |
agcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatg |
99 |
Q |
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| T |
32559616 |
agcggtatcatccgctaacactttagtagtctcggattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatg |
32559694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 633
Target Start/End: Complemental strand, 32692124 - 32692090
Alignment:
| Q |
599 |
tagaatcaaaattattgttagagaaaaacttgcct |
633 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32692124 |
tagaatcaaaattattgttagagaaaaacttgcct |
32692090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 599 - 672
Target Start/End: Original strand, 61 - 134
Alignment:
| Q |
599 |
tagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctac |
672 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
61 |
tagaatcaaaattattgttagagaaaaacttgcctcgaatgctaaatcagcatccggctcattcacgcgtctac |
134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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