View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2514_low_3 (Length: 541)

Name: NF2514_low_3
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2514_low_3
NF2514_low_3
[»] chr8 (10 HSPs)
chr8 (56-428)||(6580461-6580837)
chr8 (1-219)||(6616377-6616590)
chr8 (31-215)||(6757681-6757861)
chr8 (31-215)||(6659686-6659866)
chr8 (31-215)||(6740088-6740268)
chr8 (423-541)||(6581019-6581137)
chr8 (500-541)||(6612385-6612426)
chr8 (239-293)||(35793178-35793232)
chr8 (235-274)||(5945357-5945396)
chr8 (239-293)||(22786554-22786608)
[»] scaffold0470 (2 HSPs)
scaffold0470 (1-219)||(5663-5876)
scaffold0470 (500-541)||(1673-1714)
[»] chr4 (2 HSPs)
chr4 (239-289)||(9116266-9116316)
chr4 (235-289)||(40202280-40202334)
[»] chr3 (5 HSPs)
chr3 (239-289)||(39994200-39994250)
chr3 (239-289)||(4037150-4037200)
chr3 (239-289)||(10688617-10688667)
chr3 (239-289)||(11233515-11233565)
chr3 (239-289)||(49279498-49279548)
[»] chr7 (5 HSPs)
chr7 (238-289)||(36436058-36436109)
chr7 (239-289)||(16876748-16876798)
chr7 (239-289)||(18867959-18868009)
chr7 (239-289)||(23185934-23185984)
chr7 (239-289)||(46425349-46425399)
[»] chr6 (3 HSPs)
chr6 (239-289)||(6139327-6139377)
chr6 (239-289)||(7506641-7506691)
chr6 (239-289)||(9928270-9928320)
[»] chr2 (4 HSPs)
chr2 (239-289)||(3496810-3496860)
chr2 (239-289)||(11226155-11226205)
chr2 (239-289)||(15141889-15141939)
chr2 (239-289)||(19037078-19037128)
[»] chr1 (5 HSPs)
chr1 (239-293)||(26478571-26478625)
chr1 (239-289)||(27032331-27032381)
chr1 (239-289)||(27907712-27907762)
chr1 (239-289)||(51748561-51748611)
chr1 (240-289)||(24671166-24671215)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 56 - 428
Target Start/End: Original strand, 6580461 - 6580837
Alignment:
Q  56 gttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttc 155  Q
    ||||||||||| |||||||||| |||||||| | ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | | |||||||||    
T  6580461 gttaactttatctcttagtaagcgaaatctcctttcaacatgcttgctttttccatggttaattgataattttctaaatcaattgttagcgagaagtttc 6580560  T
Q  156 attcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttgacaagcaacaaatgtatcatttcatatctctcttttaacta 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6580561 attcaagcaatctcagtaatcttcaattcttcaagcaacattttaatccatagtgcttgacaagcaacaaatgtatcatttcatatttctcttttaacta 6580660  T
Q  256 ctcattctctctcatttaattgatttattttaattattactaaaatacacttgaggcaccaatacatcaaaagtcgatgataaccaaaatgagattcttt 355  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6580661 ctcattctctctcatataattgatttattttaattattactaaaatacacttgaggcaccaatacatcaaaagtagatgatagccaaaatgagattcttt 6580760  T
Q  356 ttat--tctatttttctcacaacatggtgttaatgtttttgtcctttgtgg--tctgtcactcttgttttctaggtt 428  Q
    ||||  |||||||||||||||||||||||| |||| ||||||||||  |||  ||||||||||||||||| ||||||    
T  6580761 ttattctctatttttctcacaacatggtgtcaatgcttttgtccttcctggtctctgtcactcttgttttttaggtt 6580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6616377 - 6616590
Alignment:
Q  1 tttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| ||||||||||||||||||| | |||||||||||    
T  6616377 tttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgtta-----actttatctcttagtaagtgaaatctcctttcaacatgctt 6616471  T
Q  101 acttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagcaacatttca 200  Q
     ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6616472 gctttttccatggttaattgataatttgctaaatgaattgttaacaagaagtttcattcaagcaatctcagtaatattcaattcttcaagcaacatttca 6616571  T
Q  201 atccttagtgcttgacaag 219  Q
    |||| ||||||||||||||    
T  6616572 atccatagtgcttgacaag 6616590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 6757681 - 6757861
Alignment:
Q  31 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgct 130  Q
    |||||||| |||||||||||||||     |||| || |||||| |||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||    
T  6757681 taaagttcgaaactatctttgtta-----acttgatctcttaggaagtgaaatctcctttcaacatgcttgcttcttccatggttaattgctaatttgct 6757775  T
Q  131 aaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagc-aacatttcaatccttagtgcttga 215  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||    
T  6757776 aaatcaattgtcaaaaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaaacatttcaatccatagtgcttga 6757861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 6659686 - 6659866
Alignment:
Q  31 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattga-taatttgc 129  Q
    |||||||| |||||||||||||||     |||| || || ||| |||| ||||||  | ||||||||||| |||||||||||||||||||| ||||||||    
T  6659686 taaagttcgaaactatctttgtta-----acttgatctcgtaggaagtcaaatctactttcaacatgcttgcttcttccatggttaattgagtaatttgc 6659780  T
Q  130 taaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttga 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  6659781 taaatcaattgtcaacaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaacatttcaatccatagtacttga 6659866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 6740088 - 6740268
Alignment:
Q  31 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattga-taatttgc 129  Q
    |||||||| |||||||||||||||     |||| || || ||| |||| ||||||  | ||||||||||| |||||||||||||||||||| ||||||||    
T  6740088 taaagttcgaaactatctttgtta-----acttgatctcgtaggaagtcaaatctactttcaacatgcttgcttcttccatggttaattgagtaatttgc 6740182  T
Q  130 taaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttga 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  6740183 taaatcaattgtcaacaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaacatttcaatccatagtacttga 6740268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 423 - 541
Target Start/End: Original strand, 6581019 - 6581137
Alignment:
Q  423 taggtttaagtgaaagagttgaagttgtggtcccttgtgtctctttccttaaaacatctacgatgtcggttcttttatacgtctactatatatgcctcat 522  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |||| ||||||||| ||||    
T  6581019 taggtttacttgaaagagttgaagttgtggtcccttgtatctctttccttaaaaaatcttcgatgtgggttcttttatacatctattatatatgcttcat 6581118  T
Q  523 atttctctccttatcccct 541  Q
    |||||||||||||||||||    
T  6581119 atttctctccttatcccct 6581137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 6612385 - 6612426
Alignment:
Q  500 tacgtctactatatatgcctcatatttctctccttatcccct 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6612385 tacgtctactatatatgcctcatatttctctccttatcccct 6612426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 35793178 - 35793232
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 293  Q
    ||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||    
T  35793178 tatctctctcttaactactcattatctctcatttaaataatttattttaattatt 35793232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 5945396 - 5945357
Alignment:
Q  235 ttcatatctctcttttaactactcattctctctcatttaa 274  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  5945396 ttcatatctctcttttaactaatcattctctctcatttaa 5945357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 22786554 - 22786608
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 293  Q
    ||||||||||||||| | ||||||||| |||||||| | ||||| ||||||||||    
T  22786554 tatctctcttttaaccattcattctctttcatttaaataatttactttaattatt 22786608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 5663 - 5876
Alignment:
Q  1 tttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| ||||||||||||||||||| | |||||||||||    
T  5663 tttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgtta-----actttatctcttagtaagtgaaatctcctttcaacatgctt 5757  T
Q  101 acttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagcaacatttca 200  Q
     ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5758 gctttttccatggttaattgataatttgctaaatgaattgttaacaagaagtttcattcaagcaatctcagtaatattcaattcttcaagcaacatttca 5857  T
Q  201 atccttagtgcttgacaag 219  Q
    |||| ||||||||||||||    
T  5858 atccatagtgcttgacaag 5876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 1673 - 1714
Alignment:
Q  500 tacgtctactatatatgcctcatatttctctccttatcccct 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1673 tacgtctactatatatgcctcatatttctctccttatcccct 1714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 9116316 - 9116266
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  9116316 tatctcttttttaacaactcattctctctcatttaaataatttattttaat 9116266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 40202334 - 40202280
Alignment:
Q  235 ttcatatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||| ||||||||||| ||||||||||| |||| ||| | ||||||||||||    
T  40202334 ttcatatgtctcttttaaccactcattctctttcatctaaataatttattttaat 40202280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 39994200 - 39994250
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||||||||| |||||||||||||||| ||| | ||||||||||||    
T  39994200 tatctctcttttaacaactcattctctctcatctaaataatttattttaat 39994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 4037150 - 4037200
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  4037150 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 4037200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 10688617 - 10688667
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  10688617 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 10688667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 11233515 - 11233565
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  11233515 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 11233565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 49279498 - 49279548
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  49279498 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 49279548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 36436109 - 36436058
Alignment:
Q  238 atatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||||| |||||| ||||||||||||||  || ||||||||||||||    
T  36436109 atatctctcttctaactaatcattctctctcatcaaaatgatttattttaat 36436058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 16876798 - 16876748
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  16876798 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 16876748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 18868009 - 18867959
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  18868009 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 18867959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 23185984 - 23185934
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  23185984 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 23185934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 46425399 - 46425349
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  46425399 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 46425349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 6139327 - 6139377
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||||||||| | |||||||||||||| ||| | ||||||||||||    
T  6139327 tatctctcttttaaccattcattctctctcatctaaataatttattttaat 6139377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 7506641 - 7506691
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  7506641 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 7506691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 9928270 - 9928320
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  9928270 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 9928320  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 3496860 - 3496810
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  3496860 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 3496810  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 11226155 - 11226205
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  11226155 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 11226205  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 15141889 - 15141939
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||||||||| ||| |||||||||||| ||| | ||||||||||||    
T  15141889 tatctctcttttaacaacttattctctctcatctaaataatttattttaat 15141939  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 19037128 - 19037078
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 19037078  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 26478571 - 26478625
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 293  Q
    ||||| ||||||||| | ||||| ||| |||||||| ||||||||||||||||||    
T  26478571 tatctttcttttaacaattcattatctttcatttaaatgatttattttaattatt 26478625  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 27032381 - 27032331
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  27032381 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 27032331  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 27907712 - 27907762
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  27907712 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 27907762  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 51748561 - 51748611
Alignment:
Q  239 tatctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    ||||| ||||||||| |||||||||||||||| ||| | ||||||||||||    
T  51748561 tatctttcttttaacaactcattctctctcatctaaataatttattttaat 51748611  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 24671166 - 24671215
Alignment:
Q  240 atctctcttttaactactcattctctctcatttaattgatttattttaat 289  Q
    |||| ||| ||||| |||||||||||||||||||| | ||||||||||||    
T  24671166 atctttctcttaaccactcattctctctcatttaaataatttattttaat 24671215  T

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