View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2514_low_9 (Length: 285)
Name: NF2514_low_9
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 20641451 - 20641254
Alignment:
| Q |
18 |
ccttcttggtgcagagtgaacaaaga-taatcaagatatgattgtcgaaaaccataagatttgagggcagtagatagcttagcaaaccagcaacgcggag |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
20641451 |
ccttcttggtgcagagtgaacaaagaataatcaagatatgattgtcgaaaaccataagatttgagggcagcagatagcttagcaaaccagcaatgcggag |
20641352 |
T |
|
| Q |
117 |
cttgttttaagccataaagtgattttcgtaatttgcaaaccatgtctggttgagaaacagaaaaaccaggaggcattttcatgaaaacttcttcattc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20641351 |
cttgttttaagccataaagtgattttcgtaatttgcaaaccatgtctggttgagaaacagaaaaaccaggaggcattttcatgaaaacttcttcattc |
20641254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 33159169 - 33158938
Alignment:
| Q |
18 |
ccttcttggtgcagagtgaacaaaga-taatcaagatatgattgtcgaaaaccataagatttgagggcagtagatagcttagcaaaccagcaacgcggag |
116 |
Q |
| |
|
|||||||| |||| |||||||||||| || || || ||||| || | |||||||| ||||||||||||| ||| |||||||| ||| |||||| |||| |
|
|
| T |
33159169 |
ccttcttgctgcaaagtgaacaaagagtagtcgaggtatgactgctggaaaccatatgatttgagggcagcagagagcttagcgaactagcaact-ggag |
33159071 |
T |
|
| Q |
117 |
cttgttttaagccataaagtgattttcgtaatttgcaaaccatgtctggttgagaaacagaaaaaccaggaggcattttcatgaaaacttcttcattcag |
216 |
Q |
| |
|
|||||||||| ||||| |||||||| || | ||||| || ||| |||||| || | ||||||||||||||||||||||| || ||||| || | || |
|
|
| T |
33159070 |
cttgttttaacccatagagtgatttgcgaagcttgcagactgtgtttggttgtgatattgaaaaaccaggaggcattttcataaagacttcctcgtgcaa |
33158971 |
T |
|
| Q |
217 |
atctccatgtagaaacgcattgtgcacatccat |
249 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |
|
|
| T |
33158970 |
atctccatgtagaaaggcgttgtgcacatccat |
33158938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 6383083 - 6382974
Alignment:
| Q |
92 |
agcttagcaaaccagcaacgcggagcttgttttaagccataaagtgattttcgtaatttgcaaaccatgtctggttgagaaacagaaaaaccaggaggca |
191 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| || || ||||| || | | ||||| ||||| ||||||||||| | ||||||||| |||| |
|
|
| T |
6383083 |
agcttagcaaaccaacaacggggagcttgttttaatccgtacagtgacttcccaagcttgcataccatctctggttgagagggacgaaaaccagggggca |
6382984 |
T |
|
| Q |
192 |
ttttcatgaa |
201 |
Q |
| |
|
||||||||| |
|
|
| T |
6382983 |
gtttcatgaa |
6382974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 1618669 - 1618778
Alignment:
| Q |
92 |
agcttagcaaaccagcaacgcggagcttgttttaagccataaagtgattttcgtaatttgcaaaccatgtctggttgagaaacagaaaaaccaggaggca |
191 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| || || ||||| || | | ||||| ||||| ||||||||||| | ||||||||| |||| |
|
|
| T |
1618669 |
agcttagcaaaccaacaacggggagcttgttttaatccgtacagtgacttcccaagcttgcataccatctctggttgagagggacgaaaaccagggggca |
1618768 |
T |
|
| Q |
192 |
ttttcatgaa |
201 |
Q |
| |
|
||||||||| |
|
|
| T |
1618769 |
gtttcatgaa |
1618778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University