View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2515_high_1 (Length: 474)
Name: NF2515_high_1
Description: NF2515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2515_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 455
Target Start/End: Original strand, 26432773 - 26433215
Alignment:
| Q |
13 |
gcaaagggaatgaaacaaacaaaattggcgaggagaaagtcgattatagtcgcaaccccagtcaacatttatgatttatggaggtagtggaattggctgt |
112 |
Q |
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| T |
26432773 |
gcaaagggaatgaaacaaacaaaattggcgaggagaaagtcgattatagtcgcaaccccagtcaacatttatgatttatggaggaagtggaattggcggt |
26432872 |
T |
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| Q |
113 |
gaagaaagaacatgtactaattggtgtgattttgtggtggattttagggttgtggatgaagcaaagaagattaattggtgtgattttggaacgaatgaat |
212 |
Q |
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| T |
26432873 |
gaagaaagaacatgtacaaattggtgtgattttgtggtggattctagggttgtggatgaagcaaagaagattaattggtgtgatttttgaatgaatgaat |
26432972 |
T |
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| Q |
213 |
gagagtgaagaagctttcttccaaaactgtgatgattcttcaagaatcacattgtttcagccttaggagagaatctcaaatgctatttggtaaacggaac |
312 |
Q |
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| T |
26432973 |
gagagtgaagaagctttcttccaagactgtgatgattcttcaagaatcacattgtttcagccttaggagagaatctcaaatactatttggtaaacggaat |
26433072 |
T |
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| Q |
313 |
aaaaagggggaagttatcggagaagatggatatgctatttcgtaataacatacaacctgttgagagcgatttttcatgattctggtatcatggttcaaga |
412 |
Q |
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| T |
26433073 |
aaaaagggggaagttatcggagaagatggatatgctatttcgtaataacatacaacctgttgagagcgatttttcatgattctggtatcatggttcaaga |
26433172 |
T |
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| Q |
413 |
ttcttaaagaattacattgttacagtcttagtggagaatctct |
455 |
Q |
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| T |
26433173 |
ttcttaaagaattacattgttacagtcttagtggagaatctct |
26433215 |
T |
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