View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2515_high_11 (Length: 243)
Name: NF2515_high_11
Description: NF2515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2515_high_11 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 93 - 243
Target Start/End: Complemental strand, 6964539 - 6964390
Alignment:
| Q |
93 |
aatgcaaaacatattcaagccaaattgcaatgtcaacatcagaagatacaaattgtctggtttttacaacacattttgagacaaatagtataatactatt |
192 |
Q |
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| T |
6964539 |
aatgcaaaacatattcaagccaaattgcaatgtcaacatcagaagatacaaattgtctggtttttacaacacattttgagacaaatagtataatactatt |
6964440 |
T |
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| Q |
193 |
gacaacttttaaaaacacaccctttatttaacaaaaggaaaaaagtacacc |
243 |
Q |
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| T |
6964439 |
gacaactttt-aaaacacaccctttatttaaaaaaaggaaaaaagtacacc |
6964390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 6954826 - 6954675
Alignment:
| Q |
92 |
aaatgcaaaacatattcaagccaaattgcaatgtcaacatcagaagatacaaattgtctggtttttacaacacattttgagacaaatagtataatactat |
191 |
Q |
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|||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6954826 |
aaatgcaaaacataatcaagccaaatttcattgtcaacatcagaagatacaaattgtctggtttttacaacacattttgagacaaatagtataatactat |
6954727 |
T |
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| Q |
192 |
tgacaacttttaaaaacacaccctttatttaacaaaaggaaaaaagtacacc |
243 |
Q |
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| T |
6954726 |
tgacaacttttaaaaacacaccctttatttaaaaaaaggaaaaaagtacacc |
6954675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 6954936 - 6954892
Alignment:
| Q |
19 |
cagagtcactccctacaccatgctcaaaagcaacacaaaatataa |
63 |
Q |
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| T |
6954936 |
cagagtcactccctacaccatgctcaaaagcaacacaaaatataa |
6954892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 6964664 - 6964623
Alignment:
| Q |
19 |
cagagtcactccctacaccatgctcaaaagcaacacaaaata |
60 |
Q |
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| T |
6964664 |
cagagtcactccctacaccatgctcaaaagcaacacaaaata |
6964623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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