View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2515_high_2 (Length: 440)

Name: NF2515_high_2
Description: NF2515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2515_high_2
NF2515_high_2
[»] chr7 (22 HSPs)
chr7 (1-104)||(32564428-32564531)
chr7 (1-99)||(41915741-41915839)
chr7 (1-99)||(22343361-22343459)
chr7 (1-99)||(38044197-38044295)
chr7 (1-100)||(8238211-8238311)
chr7 (1-99)||(7727906-7728004)
chr7 (1-99)||(40846115-40846213)
chr7 (1-99)||(8080385-8080483)
chr7 (9-99)||(36208173-36208263)
chr7 (34-99)||(36361948-36362013)
chr7 (1-99)||(35468857-35468955)
chr7 (29-99)||(46033831-46033901)
chr7 (9-99)||(46374812-46374902)
chr7 (1-98)||(35522877-35522974)
chr7 (34-99)||(36362026-36362091)
chr7 (34-94)||(3784000-3784060)
chr7 (1-104)||(38267035-38267138)
chr7 (1-99)||(7389389-7389487)
chr7 (9-99)||(26296644-26296734)
chr7 (1-99)||(38837217-38837315)
chr7 (34-99)||(40957707-40957772)
chr7 (51-99)||(11044188-11044236)
[»] chr4 (21 HSPs)
chr4 (1-99)||(32766958-32767056)
chr4 (1-105)||(8343165-8343269)
chr4 (1-99)||(47986208-47986306)
chr4 (1-99)||(19670718-19670816)
chr4 (1-99)||(55475191-55475289)
chr4 (1-99)||(29547961-29548059)
chr4 (1-99)||(50813894-50813992)
chr4 (1-78)||(17983745-17983822)
chr4 (1-99)||(55079715-55079814)
chr4 (1-105)||(11511464-11511568)
chr4 (1-100)||(18924497-18924596)
chr4 (1-99)||(44536748-44536845)
chr4 (31-101)||(6034042-6034112)
chr4 (1-91)||(29589742-29589831)
chr4 (1-101)||(31910190-31910290)
chr4 (1-100)||(40574778-40574877)
chr4 (1-99)||(42044369-42044467)
chr4 (1-99)||(48183051-48183149)
chr4 (1-99)||(50052430-50052528)
chr4 (34-99)||(480482-480547)
chr4 (29-77)||(50526201-50526249)
[»] chr6 (13 HSPs)
chr6 (1-102)||(15508026-15508127)
chr6 (1-99)||(15990044-15990142)
chr6 (1-99)||(30341362-30341460)
chr6 (1-105)||(4231542-4231646)
chr6 (30-78)||(31953061-31953109)
chr6 (1-100)||(17598553-17598652)
chr6 (34-80)||(11427637-11427683)
chr6 (34-94)||(28536521-28536581)
chr6 (1-105)||(32869672-32869776)
chr6 (20-99)||(12732482-12732561)
chr6 (1-99)||(31110763-31110859)
chr6 (1-99)||(31976248-31976346)
chr6 (1-94)||(22880660-22880753)
[»] chr1 (17 HSPs)
chr1 (1-102)||(50591002-50591103)
chr1 (1-105)||(41608495-41608599)
chr1 (1-99)||(5959002-5959100)
chr1 (1-100)||(47748442-47748540)
chr1 (17-99)||(7740733-7740815)
chr1 (1-99)||(32813247-32813345)
chr1 (34-99)||(3000319-3000384)
chr1 (1-58)||(44332373-44332430)
chr1 (1-77)||(37926440-37926516)
chr1 (34-101)||(9474911-9474978)
chr1 (1-99)||(2581915-2582013)
chr1 (34-99)||(38595154-38595219)
chr1 (1-105)||(48716284-48716388)
chr1 (34-99)||(43132-43197)
chr1 (29-98)||(44453980-44454049)
chr1 (1-77)||(8346390-8346466)
chr1 (10-78)||(45044571-45044639)
[»] chr8 (19 HSPs)
chr8 (1-99)||(16383377-16383475)
chr8 (1-99)||(24307795-24307893)
chr8 (1-99)||(30479476-30479574)
chr8 (1-99)||(32032725-32032822)
chr8 (1-99)||(16056403-16056501)
chr8 (1-99)||(34307216-34307314)
chr8 (18-99)||(24307629-24307710)
chr8 (1-99)||(4854865-4854963)
chr8 (9-99)||(15258939-15259029)
chr8 (1-101)||(15048184-15048283)
chr8 (1-100)||(15197332-15197431)
chr8 (1-105)||(40423945-40424049)
chr8 (4-45)||(32708010-32708051)
chr8 (29-100)||(38229428-38229498)
chr8 (34-94)||(5957835-5957895)
chr8 (34-100)||(504156-504222)
chr8 (1-99)||(12831047-12831145)
chr8 (34-99)||(1179975-1180040)
chr8 (1-97)||(10621089-10621185)
[»] chr5 (20 HSPs)
chr5 (1-99)||(3921267-3921365)
chr5 (1-99)||(2252170-2252268)
chr5 (1-99)||(39688899-39688997)
chr5 (1-100)||(26720515-26720614)
chr5 (1-100)||(26990264-26990363)
chr5 (34-100)||(14831813-14831879)
chr5 (34-78)||(16327922-16327966)
chr5 (1-100)||(28177774-28177873)
chr5 (34-99)||(35943927-35943992)
chr5 (3-99)||(15409614-15409710)
chr5 (1-94)||(18520886-18520979)
chr5 (10-105)||(6679692-6679787)
chr5 (1-92)||(13811659-13811750)
chr5 (34-101)||(35785197-35785264)
chr5 (1-76)||(42414304-42414379)
chr5 (34-99)||(2740274-2740339)
chr5 (34-79)||(33825359-33825404)
chr5 (34-99)||(36732977-36733042)
chr5 (30-78)||(10227925-10227973)
chr5 (36-95)||(10356638-10356698)
[»] chr2 (24 HSPs)
chr2 (1-100)||(43490120-43490219)
chr2 (1-99)||(45097737-45097835)
chr2 (1-99)||(38732354-38732452)
chr2 (1-78)||(2997489-2997566)
chr2 (1-100)||(40613904-40614003)
chr2 (1-99)||(42257193-42257291)
chr2 (1-99)||(13365351-13365451)
chr2 (34-99)||(5574523-5574588)
chr2 (1-99)||(9058480-9058578)
chr2 (1-100)||(13438342-13438441)
chr2 (1-99)||(2533124-2533221)
chr2 (29-99)||(26891534-26891604)
chr2 (1-99)||(38273144-38273242)
chr2 (1-103)||(40701474-40701576)
chr2 (29-102)||(17820034-17820107)
chr2 (1-94)||(28863460-28863553)
chr2 (34-99)||(30915463-30915528)
chr2 (1-99)||(33436102-33436200)
chr2 (1-99)||(33436211-33436309)
chr2 (34-99)||(7465770-7465835)
chr2 (34-99)||(17473020-17473085)
chr2 (1-94)||(19930822-19930915)
chr2 (1-45)||(3034985-3035029)
chr2 (1-105)||(28381657-28381761)
[»] chr3 (26 HSPs)
chr3 (1-101)||(45058555-45058654)
chr3 (1-77)||(36331331-36331407)
chr3 (1-99)||(41189766-41189864)
chr3 (1-99)||(11347924-11348022)
chr3 (30-99)||(14623870-14623939)
chr3 (1-78)||(48587093-48587170)
chr3 (34-105)||(13898090-13898161)
chr3 (17-104)||(25395351-25395438)
chr3 (1-100)||(26141534-26141633)
chr3 (1-100)||(53982010-53982109)
chr3 (1-99)||(51419362-51419460)
chr3 (34-99)||(11095388-11095453)
chr3 (34-99)||(49607414-49607479)
chr3 (34-95)||(52629304-52629365)
chr3 (1-101)||(33644198-33644298)
chr3 (9-96)||(26754698-26754785)
chr3 (1-99)||(8076393-8076491)
chr3 (9-99)||(11907371-11907461)
chr3 (1-103)||(20764917-20765019)
chr3 (1-99)||(27714893-27714991)
chr3 (29-99)||(36331408-36331478)
chr3 (1-99)||(54868897-54868995)
chr3 (34-99)||(8956762-8956827)
chr3 (1-94)||(31456694-31456787)
chr3 (34-99)||(33118886-33118951)
chr3 (1-105)||(24699956-24700060)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-86)||(152511-152596)
[»] scaffold0321 (1 HSPs)
scaffold0321 (34-99)||(10144-10209)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32564428 - 32564531
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||| |||||| |||||||||||||    
T  32564428 aaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactca 32564527  T
Q  101 aaaa 104  Q
    ||||    
T  32564528 aaaa 32564531  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41915839 - 41915741
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  41915839 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 41915741  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 22343459 - 22343361
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| | |||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  22343459 aaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 22343361  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38044295 - 38044197
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| || ||||||||||||||| ||| | |||||| || |||||||||||||||| ||||||| ||||||||||||    
T  38044295 aaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 38044197  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8238311 - 8238211
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccaccta-agagtgtttaggtatcataactc 99  Q
    ||||||||||||||| ||||||||||  | ||||||||||||||| ||| |||||||| || |||||||||||||| || ||||||| ||||||||||||    
T  8238311 aaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T
Q  100 a 100  Q
    |    
T  8238211 a 8238211  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7728004 - 7727906
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||   ||||||  | |||||| ||||||||| ||||||| ||||||||||||    
T  7728004 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataactc 7727906  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40846115 - 40846213
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||| |||||| ||||||||||| | |||||| |||||||| ||| | |||||| || ||||||||||||||||  |||||| ||||||||||||    
T  40846115 aaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8080385 - 8080483
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || ||||||||||||||||||||||||| || |||||||||||||||| |||| || ||||||| ||||    
T  8080385 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 8080483  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 36208263 - 36208173
Alignment:
Q  9 cttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||  |  ||||||||||| ||||| ||| |||||||||| ||||||| ||||||||| |||| || ||||||||||||    
T  36208263 cttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactc 36208173  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 36361948 - 36362013
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||| |||| || ||||||| ||||    
T  36361948 tgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 36362013  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35468857 - 35468955
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||  |||||||||||||| || | ||||| | |||||||||||| ||||||||  |||||||||||| |||||  ||| || ||||||| ||||    
T  35468857 aaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactc 35468955  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 46033831 - 46033901
Alignment:
Q  29 ccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||| |||||||||||||||| ||||| || || ||||||||||||||||| | | || ||||||||||||    
T  46033831 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 46374812 - 46374902
Alignment:
Q  9 cttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| |||||||| | ||||| |||||||||||| ||| ||||| || || ||| ||||||||||||  ||| || ||||||||||||    
T  46374812 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 35522974 - 35522877
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataact 98  Q
    ||||||| ||||||| || ||||||| ||||| |||||||||||| ||| ||||| ||  | ||||||||||| ||||  ||| || |||||||||||    
T  35522974 aaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataact 35522877  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 36362091 - 36362026
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| ||||||||| ||||||||| |||| || ||||||| ||||    
T  36362091 tgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactc 36362026  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 3784060 - 3784000
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcat 94  Q
    |||||||||||| ||| ||||||||  |||||||||||||||||| |||| || |||||||    
T  3784060 tgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 38267138 - 38267035
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || ||||||| ||| |||| |||| || ||||||| |||||    
T  38267138 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactca 38267039  T
Q  101 aaaa 104  Q
    ||||    
T  38267038 aaaa 38267035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7389487 - 7389389
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| |  |||||||||||||||| |||| || ||||||| ||||    
T  7389487 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 7389389  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 26296734 - 26296644
Alignment:
Q  9 cttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| |||||||||| ||||| | |||||||||||||| | ||| || || | ||||| ||||||||  ||| || ||||||||||||    
T  26296734 cttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38837315 - 38837217
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| |||||||||  | || |||||||||||||||| |||| || ||||||| ||||    
T  38837315 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactc 38837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 40957772 - 40957707
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| ||| |||| |  ||||||||||||||||||||| || ||||||| ||||    
T  40957772 tgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactc 40957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 11044236 - 11044188
Alignment:
Q  51 ggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||| ||||||||||||||||||| |||| || ||||||| ||||    
T  11044236 ggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 11044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32767056 - 32766958
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | | |||||||| || |||||||||||||||||||||||| ||||||||||||    
T  32767056 aaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactc 32766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8343165 - 8343269
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||||||     
T  8343165 aaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactcg 8343264  T
Q  101 aaaaa 105  Q
    |||||    
T  8343265 aaaaa 8343269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47986306 - 47986208
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  47986306 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactc 47986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19670718 - 19670816
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||  ||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  19670718 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 55475289 - 55475191
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||||| || ||||||||||||||||  |||||| ||||||||||||    
T  55475289 aaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29547961 - 29548059
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||| ||| || ||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||  |||||| ||||||||||||    
T  29547961 aaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 29548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 50813894 - 50813992
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||| |||||  ||||||||||||||||| ||| |||||||| || |||||| ||||||||||||||||| ||||||||||||    
T  50813894 aaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactc 50813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17983745 - 17983822
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaag 78  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || ||||||||||||||||    
T  17983745 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 17983822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 55079715 - 55079814
Alignment:
Q  1 aaagtgtacttgtgcaggg-tccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||  ||| ||||||| |||||||||||||||||| | | ||||||||  | |||||||||||||||| ||||||| ||||||||||||    
T  55079715 aaagtgtacttgtgtgggggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11511464 - 11511568
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||||||| |||||||| || |||||||||||||||| |||| || ||||||| |||||    
T  11511464 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 11511563  T
Q  101 aaaaa 105  Q
    |||||    
T  11511564 aaaaa 11511568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 18924497 - 18924596
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||||||||||| | || ||||| |||||||||||||||||| ||| | | |||| || |||||||||||||||| || |||| | |||||||||||    
T  18924497 aaagtgtacttgtgcggagttcatattgccacatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactca 18924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 44536748 - 44536845
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||| ||  ||||| ||||  ||||||||||||||||| ||| | |||||| || ||||||||||||||| |||||||| ||||||||||||    
T  44536748 aaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtcaaggg-tgtattgccacctaaaagtgtttatgtatcataactc 44536845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 6034112 - 6034042
Alignment:
Q  31 acatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactcaa 101  Q
    ||||||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||| ||||||    
T  6034112 acatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcaa 6034042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29589742 - 29589831
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtat 91  Q
    ||||||||||||||  |||||||||| ||||||| |||||||||| ||| |||||||| || ||||||| || ||||| ||||||| ||||    
T  29589742 aaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattg-caactaagggtgtttatgtat 29589831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31910290 - 31910190
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||| | || |  |||||||||||| ||| |||||||| |  ||||||| ||||||||  ||| || |||||||||||||    
T  31910290 aaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactca 31910191  T
Q  101 a 101  Q
    |    
T  31910190 a 31910190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 40574877 - 40574778
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||| | || ||||| ||||  | |||||||||||| ||| |||||||| || |||||| |||||||||  ||| || |||||||||||||    
T  40574877 aaagtgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactca 40574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 42044369 - 42044467
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||  | ||||||||||||||||||| |||| || ||||||| ||||    
T  42044369 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 48183051 - 48183149
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || ||||||||||| |||| |||| || ||||||| ||||    
T  48183051 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 50052430 - 50052528
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || ||||||||||||||||  ||| || ||||||| ||||    
T  50052430 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 480482 - 480547
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || ||||||| |||||||| |||| || ||||||| ||||    
T  480482 tgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 50526201 - 50526249
Alignment:
Q  29 ccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaa 77  Q
    |||| |||||||||||| ||| |||||||| || |||||||||||||||    
T  50526201 ccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 50526249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 15508026 - 15508127
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| |||||||||||||    
T  15508026 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 15508125  T
Q  101 aa 102  Q
    ||    
T  15508126 aa 15508127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 15990044 - 15990142
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  15990044 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 30341362 - 30341460
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  30341362 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4231646 - 4231542
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||| ||| |||| ||| || |||||||||||||||   |||||| | |||||||||||    
T  4231646 aaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataactca 4231547  T
Q  101 aaaaa 105  Q
    |||||    
T  4231546 aaaaa 4231542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 31953061 - 31953109
Alignment:
Q  30 cacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaag 78  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||||    
T  31953061 cacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaag 31953109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17598652 - 17598553
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| ||||||||  |||||||||||||||||| |||| || ||||||| |||||    
T  17598652 aaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactca 17598553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 11427683 - 11427637
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagag 80  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||||    
T  11427683 tgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagag 11427637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 28536521 - 28536581
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcat 94  Q
    |||||||||||| ||| |||||||| || ||||||||||||||||  |||||| |||||||    
T  28536521 tgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32869776 - 32869672
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||| | |||||    
T  32869776 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactca 32869677  T
Q  101 aaaaa 105  Q
     ||||    
T  32869676 taaaa 32869672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 12732561 - 12732482
Alignment:
Q  20 tccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||| |||||||| |||||||||||| ||| ||||||||||  | ||||||||| ||||| ||| || ||||||| ||||    
T  12732561 tccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactc 12732482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 31110763 - 31110859
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| |||||||||||||||| | |  || |||||||||||| ||   ||||||| || ||||||||||||||||  ||| || ||||||||||||    
T  31110763 aaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttttgtga--gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 31110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31976346 - 31976248
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||| ||| |  |||| |||||||||||| ||| ||||| || || | ||||||||||||||  ||| || ||||||||||||    
T  31976346 aaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 22880660 - 22880753
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcat 94  Q
    ||||||| ||||||| |||||||  |  | || ||||||| |||| ||| |||||||| || |||||||||||||||| |||| || |||||||    
T  22880660 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 50591002 - 50591103
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| |||||||||||||    
T  50591002 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 50591101  T
Q  101 aa 102  Q
    ||    
T  50591102 aa 50591103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 41608495 - 41608599
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||||||||| | |||||||||| |||||||||||||||||| |||  ||||||| || ||||||||||||||||  |||||| |||||||||||||    
T  41608495 aaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactca 41608594  T
Q  101 aaaaa 105  Q
    |||||    
T  41608595 aaaaa 41608599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 5959002 - 5959100
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||| ||| ||||||||  | ||||||||||| |||| ||||||| ||||||||||||    
T  5959002 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 47748540 - 47748442
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||| ||||||||| || ||||||| |||||||||||||||||||| | |||||||| || |||||||||||||||| || |||| |||||||||||||    
T  47748540 aaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtcaa-gggtgtattgccacctaagggtatttatgtatcataactca 47748442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 7740815 - 7740733
Alignment:
Q  17 gggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||  |||  | ||||||||||||    
T  7740815 gggtccacatagccacgtgtcatatttttatgtaggtgtcaatggatgtattgtcacataaggttgtcaatgtatcataactc 7740733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32813345 - 32813247
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||| |  |||| |||||||||||| ||| ||||| || || ||||||||||||||||  ||| || ||||||||||||    
T  32813345 aaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 3000384 - 3000319
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || |||||||||||||||| ||||||| ||||||| ||||    
T  3000384 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44332373 - 44332430
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaa 58  Q
    ||||| ||||||||| |||||||||  |||||||||||||||||||||| ||||||||    
T  44332373 aaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaa 44332430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37926440 - 37926516
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaa 77  Q
    ||||||||||||| | || ||||| | ||||| |||||||||||||||| ||||| ||  |||||||||||||||||    
T  37926440 aaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaa 37926516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 9474911 - 9474978
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactcaa 101  Q
    |||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||| ||||||    
T  9474911 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcaa 9474978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2582013 - 2581915
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||| ||||    
T  2582013 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 38595219 - 38595154
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || |||||||||||||||  ||||||| ||||||| ||||    
T  38595219 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48716284 - 48716388
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| | ||||||  | |||||||||||||||| |||| || ||||||| |||||    
T  48716284 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactca 48716383  T
Q  101 aaaaa 105  Q
    |||||    
T  48716384 aaaaa 48716388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 43197 - 43132
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| |||||||||| | ||||||| ||| || ||||||| ||||    
T  43197 tgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 44454049 - 44453980
Alignment:
Q  29 ccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataact 98  Q
    ||||||||||||||||| ||| ||| ||||  ||||||||||||| |||  |||| || |||||||||||    
T  44454049 ccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcataact 44453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8346390 - 8346466
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaa 77  Q
    ||||||| |||||||||||||||  |  | || |||||||||||| ||| ||||||||  | |||||||||||||||    
T  8346390 aaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaa 8346466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 45044571 - 45044639
Alignment:
Q  10 ttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaag 78  Q
    |||||| |||||||| | || ||||||||||||||| | | ||||||||  | ||||||||||||||||    
T  45044571 ttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaag 45044639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 16383475 - 16383377
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  16383475 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24307795 - 24307893
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  24307795 aaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 30479476 - 30479574
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||| ||||||| ||||||||||||    
T  30479476 aaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32032822 - 32032725
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  32032822 aaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataactc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16056403 - 16056501
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| |||||||||| ||| ||||  |||||| ||||||||||||    
T  16056403 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactc 16056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34307314 - 34307216
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||| |||||  ||||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  34307314 aaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 24307710 - 24307629
Alignment:
Q  18 ggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  24307710 ggtccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4854865 - 4854963
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| |||||||||||||||| | ||||||| |||||||||||||||||||| || || ||||||||||||||||  ||| || ||||||| ||||    
T  4854865 aaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactc 4854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 15258939 - 15259029
Alignment:
Q  9 cttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||  |  ||||||||||||||||||||| | |||| | ||||||||||||| |||||||| | || ||||||||||||    
T  15258939 cttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataactc 15259029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 15048184 - 15048283
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||| | || || |||||||||||| ||| |||||||| || ||||||||||||||||  ||| || |||||||||||||    
T  15048184 aaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 15048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 15197431 - 15197332
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || ||||||||||||||||||||| || ||||||| |||||    
T  15197431 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 15197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40423945 - 40424049
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| ||||||| ||  | || |||||||||||| ||| | |||||| || |||||||||||||||| || | || ||||||| |||||    
T  40423945 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactca 40424044  T
Q  101 aaaaa 105  Q
    |||||    
T  40424045 aaaaa 40424049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 32708010 - 32708051
Alignment:
Q  4 gtgtacttgtgcagggtccatatagccacatgtcagattttt 45  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  32708010 gtgtacttgtgcggggtccatatagccacatctcagattttt 32708051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 38229498 - 38229428
Alignment:
Q  29 ccacatgtcagatttttatgtaggtgtcaatggat-gtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||||||||||||| ||| |||||||  |||  ||||||||||||||||||||| | |||||||||||||    
T  38229498 ccacatgtcagatttttgtgtgggtgtca--ggagcgtattgccacctaagagtgttcatgtatcataactca 38229428  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 5957895 - 5957835
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcat 94  Q
    |||||||||||| ||| |||||||| || ||||||||||||||||| ||| || |||||||    
T  5957895 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcat 5957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 504156 - 504222
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    |||||||||||| ||| ||||||||  | |||||||||||||||| |||| || ||||||| |||||    
T  504156 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 504222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 12831145 - 12831047
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || ||||||| |||||||| |||| || ||||||| ||||    
T  12831145 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 1179975 - 1180040
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || |||||| ||||||||| |||| || ||||||| ||||    
T  1179975 tgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10621089 - 10621185
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataac 97  Q
    ||||||| ||||||| || || || | || || |||||||||||| ||| |||||||| || |||||| |||||||||  ||| || ||||||||||    
T  10621089 aaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3921267 - 3921365
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  3921267 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2252170 - 2252268
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || ||||||||||||||||  |||||| ||||||||||||    
T  2252170 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39688899 - 39688997
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||| ||| |||| |||||  |||||| |||||||||| ||| |||||||| |||||||||||||| |||| ||||||| ||||||||||||    
T  39688899 aaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactc 39688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26720614 - 26720515
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| || ||||| | ||||| |||||||||||| ||||||||| || || ||||||||||||||||  ||| || |||||||||||||    
T  26720614 aaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26720515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26990363 - 26990264
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| || ||||| | ||||| |||||||||||| ||||||||| || || ||||||||||||||||  ||| || |||||||||||||    
T  26990363 aaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 14831879 - 14831813
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    |||||||||||||||| |||||||| || ||||||||||||||||||||| || ||||||| |||||    
T  14831879 tgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 14831813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 16327966 - 16327922
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaag 78  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  16327966 tgtcagatttttatgtgggtgtcaatggatgtattgccacctaag 16327922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28177873 - 28177774
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    |||||||  |||||| |||||||| |  |||| |||||||||||| ||| |||||||| || ||||||||||||||||  ||| || |||||||||||||    
T  28177873 aaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 28177774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 35943927 - 35943992
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| ||||||||  |||||||||||||||||| |||| || ||||||||||||    
T  35943927 tgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 15409614 - 15409710
Alignment:
Q  3 agtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||| ||||||| |||||||| | || || |||||||||||| ||| |||||||| | |||||||| ||||||||  ||| || ||||||||||||    
T  15409614 agtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 18520886 - 18520979
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcat 94  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || |||||||||||||||| |||| || |||||||    
T  18520886 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 6679787 - 6679692
Alignment:
Q  10 ttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactcaaaaaa 105  Q
    |||||| |||||||| |  |||| |||||||||||| ||| ||||||||  | |||||||||||||||   ||| || |||||||||||| |||||    
T  6679787 ttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactctaaaaa 6679692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13811750 - 13811659
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatc 92  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| ||||||||  |||||||||||||||||| |||| || |||||    
T  13811750 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatc 13811659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 35785264 - 35785197
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactcaa 101  Q
    |||||||||||| ||| ||||||||  | |||||||||||||||| |||| || ||||||| ||||||    
T  35785264 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcaa 35785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42414304 - 42414379
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccaccta 76  Q
    ||||||| ||||||| ||||||| ||  | || |||||||||||| ||| |||||||| || ||||||||||||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 42414379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 2740339 - 2740274
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || ||||||||||||||||  ||| || ||||||| ||||    
T  2740339 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 33825359 - 33825404
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaaga 79  Q
    |||||||||||||||| |||||||| |  |||||||||||||||||    
T  33825359 tgtcagatttttatgtgggtgtcaaggagtgtattgccacctaaga 33825404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 36732977 - 36733042
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || |||||||| ||||||| |||| || ||||||| ||||    
T  36732977 tgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 10227925 - 10227973
Alignment:
Q  30 cacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaag 78  Q
    |||||||||||||||| | | |||||||| |||||||||||||| ||||    
T  10227925 cacatgtcagatttttgtatcggtgtcaagggatgtattgccacataag 10227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 10356698 - 10356638
Alignment:
Q  36 tcagatttttatgtaggtgtcaatgg-atgtattgccacctaagagtgtttaggtatcata 95  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||  ||| || ||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcata 10356638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 43490219 - 43490120
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || ||||||| |||||||| ||||||| |||||||||||||    
T  43490219 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactca 43490120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45097737 - 45097835
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| | | |||||||| |||||||||||||||||||  |||||| ||||||||||||    
T  45097737 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38732452 - 38732354
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||| ||| |||||||| |||||||||| ||| |||| ||||||| ||||||||||||    
T  38732452 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2997489 - 2997566
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaag 78  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || ||||||||||||||||    
T  2997489 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 2997566  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 40613904 - 40614003
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||| | ||||| |||||||||||| ||| |||||||| || ||||||||||||||||  ||| || |||||||||||||    
T  40613904 aaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 40614003  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 42257291 - 42257193
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||| | ||||| |||||||||||||||| ||||||||  |||||||||||||||||   ||| || ||||||||||||    
T  42257291 aaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactc 42257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13365451 - 13365351
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaa--gagtgtttaggtatcataact 98  Q
    ||||||||||||||| |||||||||| | |||||||||||||||| ||| |||||||| || | |||||||| ||||  | ||||||| |||||||||||    
T  13365451 aaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgtgtttatgtatcataact 13365352  T
Q  99 c 99  Q
    |    
T  13365351 c 13365351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 5574523 - 5574588
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||| |||||||| || ||||||||||||||||||||| || ||||||| ||||    
T  5574523 tgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 5574588  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9058578 - 9058480
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| ||||||| ||  | || |||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||| ||||    
T  9058578 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13438441 - 13438342
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| |||||||||| |||||||| |||| || ||||||| |||||    
T  13438441 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactca 13438342  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2533221 - 2533124
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| ||||| || | || || |||||||||||| ||| |||||||| |||||||||||||| ||||  ||| || ||||||||||||    
T  2533221 aaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgt-ggtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 26891534 - 26891604
Alignment:
Q  29 ccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||||||||||||| ||| |||||| | || |||||||||||||||| |||  || ||||||||||||    
T  26891534 ccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38273144 - 38273242
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| || |||| |||||||| | || || |||||||||||| ||| ||||| || || |||||||||| |||||| ||| || ||||||||||||    
T  38273144 aaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactc 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40701576 - 40701474
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    |||||||  |||||| |||||||  || | || |||||||||||| ||| ||||||||  | |||||||||||||||| |||| || ||||||| |||||    
T  40701576 aaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 40701477  T
Q  101 aaa 103  Q
    |||    
T  40701476 aaa 40701474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 17820034 - 17820107
Alignment:
Q  29 ccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactcaaa 102  Q
    ||||||||||||||||| ||| |||||||| || ||||||||||||||    ||| || |||||||||||||||    
T  17820034 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactcaaa 17820107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28863553 - 28863460
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcat 94  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || |||||||||||||||| |||| || |||||||    
T  28863553 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 30915528 - 30915463
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||| || ||||| || |||||||||||||||| |||| || ||||||| ||||    
T  30915528 tgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 30915463  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 33436102 - 33436200
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || ||| |||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||| ||||    
T  33436102 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 33436200  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 33436309 - 33436211
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||||  ||||| || | ||| |||||||||||||||| ||||||||  | |||||||||| |||||  ||| || ||||||| ||||    
T  33436309 aaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 7465770 - 7465835
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || |||||||||| ||||| |||| || ||||||| ||||    
T  7465770 tgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 7465835  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 17473085 - 17473020
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || |||||||||| ||||| |||| || ||||||| ||||    
T  17473085 tgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 19930822 - 19930915
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcat 94  Q
    |||||||  |||||| ||||||| ||  | || |||||||||||| ||| | |||||| || |||||||||||||||| |||| || |||||||    
T  19930822 aaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3034985 - 3035029
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagattttt 45  Q
    ||||| ||||||||| ||||||||||  |||||||||||||||||    
T  3034985 aaagtatacttgtgcggggtccatatgaccacatgtcagattttt 3035029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 28381657 - 28381761
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| | |||||| |  | || |||||||||||| ||| |||||| |  | |||||||||||||||| |||| || ||||||| |||||    
T  28381657 aaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactca 28381756  T
Q  101 aaaaa 105  Q
     ||||    
T  28381757 taaaa 28381761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45058555 - 45058654
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||| ||||||||| |||||||||| | |||||||||||||||||||| |||||||| || |||||||||||||||| ||||||| |||||||||||||    
T  45058555 aaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtcaa-gggtgtattgccacctaagggtgtttatgtatcataactca 45058653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36331331 - 36331407
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaa 77  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| || || ||||||||||||    
T  36331331 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 41189766 - 41189864
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||| | ||||| ||||| |||||||||| ||||||||  ||||||||||||||||||  ||| || ||||||||||||    
T  41189766 aaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactc 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11347924 - 11348022
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||| |||||||||||| | ||||| |||||||||||| ||| | |||||| |||||||||| ||||||||  ||| || ||||||||||||    
T  11347924 aaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 14623870 - 14623939
Alignment:
Q  30 cacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||||  ||| || ||||||| ||||    
T  14623870 cacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 48587093 - 48587170
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaag 78  Q
    ||||||||||||||| || ||||  |  | || ||||||||||||||||||||||||| || ||||||||||||||||    
T  48587093 aaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaag 48587170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 13898090 - 13898161
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactcaaaaaa 105  Q
    |||||||||||||||| |||||||| || ||||||||||||||||  ||||||  |||||| ||| ||||||    
T  13898090 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcattactaaaaaaa 13898161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 25395351 - 25395438
Alignment:
Q  17 gggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactcaaaaa 104  Q
    ||||| ||||||||||||||||||||||| ||| ||| | || |||||||| ||||| ||||  |||||| |||||||| ||| ||||    
T  25395351 gggtctatatagccacatgtcagatttttgtgtgggtattaagggatgtatggccacataaggatgtttatgtatcatagctctaaaa 25395438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 26141534 - 26141633
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||  |||||||| |  |||| |||||||||||| ||| ||||| || || ||||||||||||||||  ||| || |||||||||||||    
T  26141534 aaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 53982109 - 53982010
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||| |||||    
T  53982109 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 53982010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 51419362 - 51419460
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| ||||| || | ||||| |||||||||||| ||| ||||| || |||||||||| || |||||  ||| || ||||||||||||    
T  51419362 aaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 11095388 - 11095453
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||| ||||    
T  11095388 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11095453  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 49607479 - 49607414
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||| ||||    
T  49607479 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 52629365 - 52629304
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcata 95  Q
    |||||||||||| ||| |||||||| || |||||||||||||||| |||| || ||||||||    
T  52629365 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33644298 - 33644198
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||||| |||||||  |  | || |||||||||||| ||| |||||||| || |||||||||||| ||| |||| || ||||||| |||||    
T  33644298 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactca 33644199  T
Q  101 a 101  Q
    |    
T  33644198 a 33644198  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 26754785 - 26754698
Alignment:
Q  9 cttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataa 96  Q
    ||||||| |||||||| |  ||||||||||||||||| ||| | |||| | || |||||||||||||||| |||| || | |||||||    
T  26754785 cttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcataa 26754698  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8076491 - 8076393
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| |||||||  |  | || ||| |||||||| ||| |||||||| || |||| ||||||||||| ||||||| ||||||| ||||    
T  8076491 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 11907461 - 11907371
Alignment:
Q  9 cttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||||||  ||||||||||||||||| |||  ||||  | |  ||||||| |||||||| |||| || ||||||||||||    
T  11907461 cttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataactc 11907371  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 20764917 - 20765019
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    ||||||| ||||| | |||||||| | ||||| |||||||||||| ||| ||||| || |  |||||| |||||||||  ||| || || ||||||||||    
T  20764917 aaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactca 20765016  T
Q  101 aaa 103  Q
    |||    
T  20765017 aaa 20765019  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 27714893 - 27714991
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||| ||||||| ||  | || |||||||||||| ||| |||||||| || |||||| ||||||||  |||| || ||||||| ||||    
T  27714893 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactc 27714991  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 36331408 - 36331478
Alignment:
Q  29 ccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||||| ||||||||| ||| | |||||| || || ||||||| ||||| ||||||| ||||||||||||    
T  36331408 ccacatgccagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactc 36331478  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 54868897 - 54868995
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||  |||||| |||||||  || | || |||||||||||| ||| ||||||||  | |||||||||||||||| |||| || ||||||| ||||    
T  54868897 aaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 8956827 - 8956762
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||| |||||||||| |||||||| |||||||||||||| ||||  ||| || ||||||| ||||    
T  8956827 tgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 31456787 - 31456694
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcat 94  Q
    ||||||| ||||||| ||||||| ||  | || |||||||||||| ||| |||||||| || ||||||||| |||| | |||| || |||||||    
T  31456787 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcat 31456694  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 33118886 - 33118951
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    ||||| |||||| ||| |||||||| || ||||||| |||||||| |||| || ||||||||||||    
T  33118886 tgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 24699956 - 24700060
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactca 100  Q
    |||||||  |||| |||||||||  | ||||| || ||||||||||||| ||||||||  | |||||||||| |||||  ||| || ||||||| ||||     
T  24699956 aaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactct 24700055  T
Q  101 aaaaa 105  Q
    |||||    
T  24700056 aaaaa 24700060  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 152596 - 152511
Alignment:
Q  1 aaagtgtacttgtgcagggtccatatagccacatgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgttta 86  Q
    |||||||| |||||| || |||||||  ||||||||||||||||| ||| |||||||| || |||||||||||| ||| |||||||    
T  152596 aaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagggtgttta 152511  T

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Target: scaffold0321 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 10144 - 10209
Alignment:
Q  34 tgtcagatttttatgtaggtgtcaatggatgtattgccacctaagagtgtttaggtatcataactc 99  Q
    |||||||||||||||| | |||||| ||||||||||||||||||  |||| || ||||||||||||    
T  10144 tgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactc 10209  T

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