View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2515_high_5 (Length: 389)
Name: NF2515_high_5
Description: NF2515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2515_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Complemental strand, 40657293 - 40656924
Alignment:
| Q |
6 |
actgatatgaacaaatactaaaatgaatgtggatcgttttcccaattaattaacagcaagctttaagtttagaggtatcaaaacttatttaactatgtgg |
105 |
Q |
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| T |
40657293 |
actgatatgtacaaatactaaaatgaatgtggattgttttcccaattaattaacagcaagctttaaatttagaggtatcaaaacttatttaactatgtgg |
40657194 |
T |
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| Q |
106 |
ttacaattgcattgttgtgacctttttgtttaattaaattggaatttaagccccagcaatacatgtaagatacatgcattttatattctaccctcactta |
205 |
Q |
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| T |
40657193 |
ttacacttgcattgttgtgacctttttgtttaattaaattggaatttaagccccagcaatacatgtaagatacatgcattttatattctaccctcactta |
40657094 |
T |
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| Q |
206 |
ggttttgctattacatttttatattgcaatcacatnnnnnnnnntagaaaataaagcacctgttagtatgttgctctaaatctatattttcttcaaaaca |
305 |
Q |
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| T |
40657093 |
ggttttgctattacatttttatattgcaatcacataaaaaaaaatagaaaataaagcacttgttagtatgttgctctaaatctatattttcttcaaaaca |
40656994 |
T |
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| Q |
306 |
aatcaatagcccccacaaaataaatttcatttaagactggaccagcaacagatccacagtaccttcaaac |
375 |
Q |
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| T |
40656993 |
aatcaatagcccccacaaaataaatttcatttaagactggaccagcaacagatccacagtaccttcaaac |
40656924 |
T |
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