View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2515_low_1 (Length: 590)
Name: NF2515_low_1
Description: NF2515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2515_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 8e-75; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 325 - 540
Target Start/End: Complemental strand, 31855852 - 31855646
Alignment:
| Q |
325 |
atatataacgacacatggatatataacgtcataaatttttgcttttgttggcaggtccagctatatttggatcaaatgtcccgtctcttccgccaattaa |
424 |
Q |
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| T |
31855852 |
atatataacgacacatggatatataacgtcataaatttttgcttttgttggcaggtccagctatatttggatcaaatgtcccgtctcttccgccaatcaa |
31855753 |
T |
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| Q |
425 |
tgcttctccattgagtccgcaaggtaaatatcatttttaatttactgtaaaaatgatatgtattgtgtatgtaaacacaaaattaaaagggttggtgata |
524 |
Q |
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| T |
31855752 |
tgcttctcccttgagttcacaaggtaaataatatt-----ttttgtgtaaaaattatatgtat----tatgtaaacacaaaattaaaagggttggtgata |
31855662 |
T |
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| Q |
525 |
tttattttcttccatt |
540 |
Q |
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| T |
31855661 |
tttattttcttccatt |
31855646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 31856293 - 31856129
Alignment:
| Q |
15 |
tcatatatttttccttttgtgacaaattatgtgatgaattttcttcctaatcttctaattcctatgaaaattatttgtatataatatgtctaatgaatgt |
114 |
Q |
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| T |
31856293 |
tcatatatttttccttttgtgacaaattatgtgatgaattattttcttcctattttagtttcctttaaaatcatttgtatataatatgtctaataaaggt |
31856194 |
T |
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| Q |
115 |
ttttattaatttgtaaattgcagcctccggctctcctttaccagctccaggtatttattaattaa |
179 |
Q |
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| T |
31856193 |
ttttataaatttgtacattgcagcttctggttctcctttaccagctccaggtatttattaattaa |
31856129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 177 - 310
Target Start/End: Complemental strand, 31856059 - 31855930
Alignment:
| Q |
177 |
taataagaaatctaatattcgaacttcaactcattaattatatactcatactaatgtccatggagctactaaccgagttacatttaaaagattattttta |
276 |
Q |
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| T |
31856059 |
taataagaaatatgagattcgaacttcaactcatca----tatactaatactaatgtccatgaagctattaatcgagttgcatttaaaagattattttta |
31855964 |
T |
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| Q |
277 |
aacattttatttgcaagaacaatacgatccaatc |
310 |
Q |
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| T |
31855963 |
aacattttatttgcaagaacagtacgatccaatc |
31855930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 31865320 - 31865222
Alignment:
| Q |
367 |
ttttgttggcaggtccagctatatttggatcaaatgtcccgtctcttccgccaattaatgcttctccattgagtccgcaaggtaaatatcatttttaat |
465 |
Q |
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| T |
31865320 |
ttttgttggcaggcccagctatccttgaatcaaatgtcccgtctcttaccctaattaatggttttcccttaaacctgcaaggtaaatatcattgttaat |
31865222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 536 - 572
Target Start/End: Complemental strand, 31855584 - 31855548
Alignment:
| Q |
536 |
ccattgaagtagctgattctcctaaatatgtaattca |
572 |
Q |
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| T |
31855584 |
ccattgaggtagctgattctcctaaatatgtaattca |
31855548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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