View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2515_low_11 (Length: 303)
Name: NF2515_low_11
Description: NF2515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2515_low_11 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 8107143 - 8106855
Alignment:
| Q |
11 |
catcatcaaaacaacagtactaagcagcttcannnnnnnn-agttgaagaggatgttaaaagagatgagcagctgccgcacactatatacaacaaatgtt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8107143 |
catcatcaaaacaacagtactaagcagcttcatttttttttagttgaagggaatgttaaaagagatgagcagctgccgcacactatatacaa---atgtt |
8107047 |
T |
|
| Q |
110 |
tgcataaaaaa-tatataatttttacaacnnnnnnnnn-gtttcaaattcatttaatatttctttatcatccaatcaaaattgattatgactcatctata |
207 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8107046 |
tgcataaaaaaatgtataatttttacaacaaaaaaaaaagtttcaaattcatttaatgtttctttatcatccaatcaaaattgattatgactcatctat- |
8106948 |
T |
|
| Q |
208 |
tattttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaatgtataannnnnnngcctatttaattagatgtctatttctcattg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8106947 |
---tttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaatgtataatttttttgcctatttaattagatgtctatttctcattg |
8106855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 8111788 - 8111546
Alignment:
| Q |
11 |
catcatcaaaacaacagtactaagcagcttcannnnnnnn-agttgaagaggatgttaaaagagatgagcagctgccgcacactatatacaacaaatgtt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8111788 |
catcatcaaaacaacagtactaagcagcttcatttttttttagttgaagggaatgttaaaagagatgagcagctgccgcacactatatacaa---atgtt |
8111692 |
T |
|
| Q |
110 |
tgcataaaaaata-tataatttttacaacnnnnnnnnngtttcaaattcatttaatatttctttatcatccaatcaaaattgattatgactcatctatat |
208 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8111691 |
tgcataaaaaaaagtataatttttacaacaaaaaaaaagtttcaaattcatttaatgtttctttatcatccaatcaaaattgattatgactcatc----t |
8111596 |
T |
|
| Q |
209 |
attttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8111595 |
attttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaa |
8111546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 772690 - 772590
Alignment:
| Q |
155 |
ttcatttaatatttctttatcatccaatcaaaattgattatgactcatctatatattttacaacaaccaatc--aaaatagatcatgacactcatttgtt |
252 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
772690 |
ttcatttaatgtttctttatcattcaatcaaaatgaattatgactcatc----tatttttcaacaaccaatcaaaaaatagatcatg--actcatttgtt |
772597 |
T |
|
| Q |
253 |
aatcaat |
259 |
Q |
| |
|
||||||| |
|
|
| T |
772596 |
aatcaat |
772590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 25113515 - 25113457
Alignment:
| Q |
156 |
tcatttaatatttctttatcatccaatcaaaattgattatgactcatctatatatttta |
214 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
25113515 |
tcatttaatgtttttttatcatccaattaaaatagattatgactcacttatatatttta |
25113457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 10894546 - 10894588
Alignment:
| Q |
156 |
tcatttaatatttctttatcatccaatcaaaattgattatgac |
198 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
10894546 |
tcatttaatgttttcttatcatccaatcaaaattgattatgac |
10894588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 38050289 - 38050247
Alignment:
| Q |
156 |
tcatttaatatttctttatcatccaatcaaaattgattatgac |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
38050289 |
tcatttaatattttcttatcatccaatcaaaatggattatgac |
38050247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 30890182 - 30890105
Alignment:
| Q |
150 |
tcaaattcatttaatatttcttt-atcatccaatcaaaattgattatgactcatctatatattttacaacaaccaatcaaaa |
230 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||| ||| ||||||| ||||||||| ||||||||||| |||| |
|
|
| T |
30890182 |
tcaaattcatttaatgttttttttatcatccaatcaaaatagatcatgactc----atatatttttcaacaaccaataaaaa |
30890105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 501099 - 501141
Alignment:
| Q |
156 |
tcatttaatatttctttatcatccaatcaaaattgattatgac |
198 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
501099 |
tcatttaatactttcttatcatccaatcaaaattgattatgac |
501141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University