View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2515_low_14 (Length: 245)
Name: NF2515_low_14
Description: NF2515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2515_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 53793572 - 53793344
Alignment:
| Q |
1 |
aaagaagctataaataacatatttaaacatgatgtctgatttatagaagnnnnnnnnnnttcactacacctgaacatcaagcacgtatgttaaccaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53793572 |
aaagaagctataaataacatatttaaacatgatgtctgatttatagaagaaaaaaaaaat-cactacacctgaacatcaagcacgtatgttaaccaaaat |
53793474 |
T |
|
| Q |
101 |
agagattattaacccctcaccacaacttttaaccaggnnnnnnnngtgaaagccttcagatcaatcatcaggaaaaccaaggaatctgtttatatgcttg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53793473 |
agagattattatcccctcaccacaacttttaaccaggaaaaaaaagtgaaagccttcagatcaatcatcaggaaaaccaaggaatctgtttatatgcttg |
53793374 |
T |
|
| Q |
201 |
gccactggtgttgcatcacctggagtataa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
53793373 |
gccactggtgttgcatcacctggagtataa |
53793344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 44203223 - 44203146
Alignment:
| Q |
148 |
gaaagccttcagatcaatcatcaggaaaaccaaggaatctgtttatatgcttggccactggtgttgcatcacctggag |
225 |
Q |
| |
|
||||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
44203223 |
gaaagtcttcggctcaatcatcaggaaaaccaagaaatctgtttatatgcttggccactggcgtagcatcacctggag |
44203146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University