View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2515_low_18 (Length: 201)
Name: NF2515_low_18
Description: NF2515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2515_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 48101570 - 48101726
Alignment:
| Q |
20 |
attaagaacaaatcatcgagtcaatatatttcctccaatcaactgctacaatatcatgtactagtatatttctttacacgttagactaacaagatgaact |
119 |
Q |
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| T |
48101570 |
attaagaacaaatcatcgagtcaatatatttcctccaatcaactgctacaatatcatgta------tatttctttacacgttagactaacaagatgaact |
48101663 |
T |
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| Q |
120 |
taattatcataacaatagnnnnnnnaccacaccggtaattagtggttgttgttgggttagaca |
182 |
Q |
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| T |
48101664 |
taattatcataacaatagtttttttaccacaccggtaattagtggttgttgttgggttagaca |
48101726 |
T |
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