View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2516_high_10 (Length: 295)

Name: NF2516_high_10
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2516_high_10
NF2516_high_10
[»] chr7 (4 HSPs)
chr7 (133-273)||(1531975-1532114)
chr7 (13-71)||(1532176-1532234)
chr7 (16-71)||(41331386-41331441)
chr7 (167-231)||(32550423-32550490)
[»] chr1 (5 HSPs)
chr1 (133-273)||(18469985-18470124)
chr1 (133-229)||(16025929-16026025)
chr1 (15-71)||(18470168-18470224)
chr1 (13-71)||(16026087-16026145)
chr1 (16-49)||(23808084-23808117)
[»] chr4 (2 HSPs)
chr4 (133-273)||(48194566-48194705)
chr4 (15-71)||(48194448-48194504)
[»] chr3 (3 HSPs)
chr3 (145-266)||(51266071-51266191)
chr3 (15-71)||(51265949-51266005)
chr3 (5-53)||(20186299-20186347)
[»] chr5 (3 HSPs)
chr5 (10-53)||(27571260-27571303)
chr5 (22-71)||(26325550-26325599)
chr5 (17-50)||(42474923-42474956)
[»] chr6 (1 HSPs)
chr6 (18-70)||(16419577-16419629)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 1532114 - 1531975
Alignment:
Q  133 actatgatcaattgatcaatttatcaataaataataaatgagatattaagtaattggaatagcctttttaaagaaatagtaattggaatagattcctctn 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  1532114 actatgatcaattgatcaatttatcaataaataataaatgagatattaagtaattggaatagcctttttaaataaatagtaattggaatagattcctct- 1532016  T
Q  233 nnnnnnnngtatttggactagttttaatgtgatacaatgag 273  Q
            |||||||||||||||||||| ||||||| ||||    
T  1532015 aaaaaaaagtatttggactagttttaatttgatacagtgag 1531975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 1532234 - 1532176
Alignment:
Q  13 atgtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1532234 atgtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 1532176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 41331386 - 41331441
Alignment:
Q  16 taaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 71  Q
    ||||||||||| |||||||||||||||||||||||  | |||||||||||||||||    
T  41331386 taaatgatcaatttattacaattaaataacttaaatgacttatgatataatttagc 41331441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 32550490 - 32550423
Alignment:
Q  167 taaatgagatattaagtaattggaatagcctttttaaagaaa---tagtaattggaatagattcctct 231  Q
    |||||||||||||||||| ||||||||| ||||| ||| |||   |||||||||||||||||||||||    
T  32550490 taaatgagatattaagtatttggaatagacttttaaaaaaaaaaatagtaattggaatagattcctct 32550423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 18470124 - 18469985
Alignment:
Q  133 actatgatcaattgatcaatttatcaataaataataaatgagatattaagtaattggaatagcctttttaaagaaatagtaattggaatagattcctctn 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||     
T  18470124 actatgatcaattgatcaatttatcaataaataataaatgagatattaagtaattagaatagcctttttaaaaaaatagtaattggaatagattcctct- 18470026  T
Q  233 nnnnnnnngtatttggactagttttaatgtgatacaatgag 273  Q
            |||||||||||||||||||||||||||| ||||    
T  18470025 gaaaaaaagtatttggactagttttaatgtgatacagtgag 18469985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 16026025 - 16025929
Alignment:
Q  133 actatgatcaattgatcaatttatcaataaataataaatgagatattaagtaattggaatagcctttttaaagaaatagtaattggaatagattcct 229  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  16026025 actatgatcaattgatcaatttatcaataaataatatatgagatattaagtaattggaataccctttttaaaaaaatagtaattggaatagattcct 16025929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 18470224 - 18470168
Alignment:
Q  15 gtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18470224 gtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 18470168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 16026145 - 16026087
Alignment:
Q  13 atgtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 71  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16026145 atgtaaatgattaacttattacaattaaataacttaaagaatttatgatataatttagc 16026087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 23808084 - 23808117
Alignment:
Q  16 taaatgatcaacttattacaattaaataacttaa 49  Q
    ||||||| ||||||||||||||||||||||||||    
T  23808084 taaatgaccaacttattacaattaaataacttaa 23808117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 133 - 273
Target Start/End: Original strand, 48194566 - 48194705
Alignment:
Q  133 actatgatcaattgatcaatttatcaataaataataaatgagatattaagtaattggaatagcctttttaaagaaatagtaattggaatagattcctctn 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||     
T  48194566 actatgatcaattgatcaatttatcaataaataataaatgagatattaagtaattggaatagccttttaaaaaaaatagtaattggaatagattcctct- 48194664  T
Q  233 nnnnnnnngtatttggactagttttaatgtgatacaatgag 273  Q
            |||||||||||||||||||| ||||||| ||||    
T  48194665 aaaaaaaagtatttggactagttttaatttgatacagtgag 48194705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 48194448 - 48194504
Alignment:
Q  15 gtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48194448 gtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 48194504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 51266071 - 51266191
Alignment:
Q  145 tgatcaatttatcaataaataataaatgagatattaagtaattggaatagcctttttaaagaaatagtaattggaatagattcctctnnnnnnnnngtat 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||||    
T  51266071 tgatcaatttatcaataaataataaatgagatattaagtaattggaatagcctttttaaaaaaatagtaattggaatagattcctct-aaaaaaaagtat 51266169  T
Q  245 ttggactagttttaatgtgata 266  Q
    ||||||||||||||||||||||    
T  51266170 ttggactagttttaatgtgata 51266191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 51265949 - 51266005
Alignment:
Q  15 gtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51265949 gtaaatgatcaacttattacaattaaataacttaaagaatttatgatataatttagc 51266005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 20186299 - 20186347
Alignment:
Q  5 cgaagaatatgtaaatgatcaacttattacaattaaataacttaaagaa 53  Q
    |||| ||||| |||| |||||||||||| ||||||| ||||||||||||    
T  20186299 cgaaaaatatttaaaggatcaacttattgcaattaattaacttaaagaa 20186347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 27571303 - 27571260
Alignment:
Q  10 aatatgtaaatgatcaacttattacaattaaataacttaaagaa 53  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||    
T  27571303 aatatttaaatgattaacttattacaattaattaacttaaagaa 27571260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 26325599 - 26325550
Alignment:
Q  22 atcaacttattacaattaaataacttaaagaatttatgatataatttagc 71  Q
    |||||||||||| |||||||||| ||||||||| | || |||||||||||    
T  26325599 atcaacttattataattaaataatttaaagaatctttggtataatttagc 26325550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 42474956 - 42474923
Alignment:
Q  17 aaatgatcaacttattacaattaaataacttaaa 50  Q
    |||||||||||||||||||||||| |||||||||    
T  42474956 aaatgatcaacttattacaattaattaacttaaa 42474923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 16419629 - 16419577
Alignment:
Q  18 aatgatcaacttattacaattaaataacttaaagaatttatgatataatttag 70  Q
    ||||||||| || ||||||||||||||||||||| | || | |||||||||||    
T  16419629 aatgatcaatttgttacaattaaataacttaaaggacttcttatataatttag 16419577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University