View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2516_high_2 (Length: 524)
Name: NF2516_high_2
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 41890076 - 41890497
Alignment:
| Q |
19 |
tttctctctccctccttcaattaaattagttgtt-ataaatagaatactttttgctgtggaagaatatggaattagttttttgacgttaagttacattgc |
117 |
Q |
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| T |
41890076 |
tttctctctccctccttcaattaaattagttgtttataaatagaatactttttgctgtggaagaatatggaattagttttttgacgttaagttacattgc |
41890175 |
T |
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| Q |
118 |
taatcaagtctcgttaagtaaactgcattctcgtttttattttagacttataagctgaaatcagtttgacaacactgttggcaatggcatgcatgcattg |
217 |
Q |
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| T |
41890176 |
taatcaagtctcgttaagtaaactgcattctcgtttttatttttgacttataagctgaaatcagtttgacaacactgttggcaatggcatgcatgcattg |
41890275 |
T |
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| Q |
218 |
atcaccgatgcacgg-----atacaatgatatcgaatatatcctttgcagtcaaggaacccaatttaatgtttgctttcatatcttactgtacataactt |
312 |
Q |
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| T |
41890276 |
atcaccgatgcacggatacaatacaatgatatcgaatatatcctttgcagtcaaggaacccaatttaatgtttgctttcatatcttactgtacataactt |
41890375 |
T |
|
| Q |
313 |
taatttaaacttcgtacggttgaattcctcttcagaacaactctgcagaacctgatctagtagaatgctgttgtagccagtacttgtacaactaatacat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
41890376 |
taatttaaacttcgtacggttgaattcctcttcagaacaactctgcagaacctgatc---tagaatgctgttgtagctagtacttgtacaactaatacat |
41890472 |
T |
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| Q |
413 |
gataatcttctgtacataattctca |
437 |
Q |
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| T |
41890473 |
gataatcttctgtacataattctca |
41890497 |
T |
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