View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2516_high_3 (Length: 447)
Name: NF2516_high_3
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 44600273 - 44600711
Alignment:
| Q |
1 |
atgaaattgggtcattttaaaagggagnnnnnnnngcctgataaggtgaatgttttgttgcttaagcatcctgggattttctatgtttctaataagtata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44600273 |
atgaaattgggtcattttaaaagggagttttttttgcctgataaggtgaatgttttgttgcttaagcatcatgggattttctatgtttctaataagtata |
44600372 |
T |
|
| Q |
101 |
ggatttatactgttttacttagagaagggtatgttgggtctcaattagttgataaagatcctcttgtggctgttaaagagaaatttggggagattatgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44600373 |
ggatttatactgttttacttagagaagggtatgttgggtctcaattagttgataaaaatcctcttgtggctgttaaagagaaatttgggaagattatgca |
44600472 |
T |
|
| Q |
201 |
ggaagggcttcatgagtataaccagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44600473 |
ggaagggcttcatgagtataaccagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatg |
44600572 |
T |
|
| Q |
301 |
aagggtagaagaaggagaagaaacagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44600573 |
aagggtagaagaaggagaagaaacagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaag |
44600672 |
T |
|
| Q |
401 |
aaagaaaaaggttttataaagttctttttgatgatgatg |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44600673 |
aaagaaaaaggttttataaagttctttttgatgatgatg |
44600711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 5723246 - 5723684
Alignment:
| Q |
1 |
atgaaattgggtcattttaaaagggagnnnnnnnngcctgataaggtgaatgttttgttgcttaagcatcctgggattttctatgtttctaataagtata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5723246 |
atgaaattgggtcattttaaaagggagttttttttgcctgataaggtgaatgttttgttgcttaagcatcctgggattttttatgtttctaataagtata |
5723345 |
T |
|
| Q |
101 |
ggatttatactgttttacttagagaagggtatgttgggtctcaattagttgataaagatcctcttgtggctgttaaagagaaatttggggagattatgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5723346 |
ggatttatactgttttacttagagaagggtatgttgggtctcaattagttgataaggatcctcttgtggttgttaaagagaaatttggggagattatgca |
5723445 |
T |
|
| Q |
201 |
ggaagggcttcatgagtataaccagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5723446 |
ggaagggcttcatgagtataaccagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatg |
5723545 |
T |
|
| Q |
301 |
aagggtagaagaaggagaagaaacagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5723546 |
aagggtagaagaaggagaagaaacagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaag |
5723645 |
T |
|
| Q |
401 |
aaagaaaaaggttttataaagttctttttgatgatgatg |
439 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5723646 |
aaagaaaaaggttttataaagttcttttttatgatgatg |
5723684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 36 - 439
Target Start/End: Original strand, 16485859 - 16486263
Alignment:
| Q |
36 |
gcctgataaggtgaatgttttgttgcttaagcatcctgggattttctatgtttctaataagtataggatttatactgttttacttagagaagggtatgtt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16485859 |
gcctgataaggtgaatgttttgttgcttaagcatcatgggattttctatgtttctaataagtataggatttatactgttttacttagagaagggtatgtt |
16485958 |
T |
|
| Q |
136 |
gggtctcaattagttgataaagatcctcttgtggctgttaaagagaaatttggggagattatgcaggaagggcttcatgagtataaccagaggcggcgac |
235 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16485959 |
gggtctcaattagttgataaaaatcctcttgtggctgttaaagagaaatttgggaagattatgcaggaagggcttcatgagtataaccagaggcggcgac |
16486058 |
T |
|
| Q |
236 |
ttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaacagggaagtgtc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16486059 |
ttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaacagggaagtgtc |
16486158 |
T |
|
| Q |
336 |
tgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaag-ttctttttgatga |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16486159 |
tgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagtttctttttgatga |
16486258 |
T |
|
| Q |
435 |
tgatg |
439 |
Q |
| |
|
||||| |
|
|
| T |
16486259 |
tgatg |
16486263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 9459838 - 9460276
Alignment:
| Q |
1 |
atgaaattgggtcattttaaaagggagnnnnnnnngcctgataaggtgaatgttttgttgcttaagcatcctgggattttctatgtttctaataagtata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
9459838 |
atgaaattgggtcattttaaaagggagttttttttgcctgataaggtgaatgttttgttgcttaagcatcctgggatattttatgtttctaataagtata |
9459937 |
T |
|
| Q |
101 |
ggatttatactgttttacttagagaagggtatgttgggtctcaattagttgataaagatcctcttgtggctgttaaagagaaatttggggagattatgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9459938 |
ggatttatactgttttacttagagaagggtatgttgggtctcaattagttgataaggatcctcttgtggttgttaaagagaaatttggggagattatgca |
9460037 |
T |
|
| Q |
201 |
ggaagggcttcatgagtataaccagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9460038 |
ggaagggcttcatgagtataaccagaggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatg |
9460137 |
T |
|
| Q |
301 |
aagggtagaagaaggagaagaaacagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9460138 |
aagggtagaagaaggagaagaaacagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaag |
9460237 |
T |
|
| Q |
401 |
aaagaaaaaggttttataaagttctttttgatgatgatg |
439 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9460238 |
aaagaaaaaggttttacaaagttctttttgatgatgatg |
9460276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 9471079 - 9471517
Alignment:
| Q |
1 |
atgaaattgggtcattttaaaagggagnnnnnnnngcctgataaggtgaatgttttgttgcttaagcatcctgggattttctatgtttctaataagtata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
9471079 |
atgaaattgggtcattttaaaagggagttttttttgcctgataaggtgaatgttttgttgcttaagcatcctgggatattttatgtttctaataagtata |
9471178 |
T |
|
| Q |
101 |
ggatttatactgttttacttagagaagggtatgttgggtctcaattagttgataaagatcctcttgtggctgttaaagagaaatttggggagattatgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9471179 |
ggatttatactgttttacttagagaagggtatgttgggtctcaattagttgataaggatcctcttgtggttgttaaagagaaatttggggagattatgca |
9471278 |
T |
|
| Q |
201 |
ggaagggcttcatgagtataaccagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9471279 |
ggaagggcttcatgagtataaccagaggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatg |
9471378 |
T |
|
| Q |
301 |
aagggtagaagaaggagaagaaacagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9471379 |
aagggtagaagaaggagaagaaacagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaag |
9471478 |
T |
|
| Q |
401 |
aaagaaaaaggttttataaagttctttttgatgatgatg |
439 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9471479 |
aaagaaaaaggttttacaaagttctttttgatgatgatg |
9471517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University