View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2516_high_6 (Length: 381)
Name: NF2516_high_6
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_high_6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 28605304 - 28605669
Alignment:
| Q |
16 |
agcggagagaagttttgggatgagaaacttcaagtatgtgagcaccatcaaagctgctcttgaaaaagaatgtcctttgacagtgtcatgcgctgacatt |
115 |
Q |
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| T |
28605304 |
agcggagagaagttttgggatgagaaacttcaagtatgtgagcaccatcaaagctgctcttgaaaaagaatgtcctttgacagtgtcatgcgctgacatt |
28605403 |
T |
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| Q |
116 |
gttgctctttctgctagagacggtattgccagggtatgtgtctttctaatcatatatacatgttgataaggagtggaacattgacaagttttacataaaa |
215 |
Q |
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| T |
28605404 |
gttgctctttctgctagagacggtattgccagggtatgtgtctttctaatcatatatacatgttgataaggagtggagcattgacaagtcttacataaaa |
28605503 |
T |
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| Q |
216 |
agtgaaactaacctcaaaaatattatttcacctaatagatcattactcnnnnnnnaagttcaactctccctctaaatttagggatannnnnnnccacgca |
315 |
Q |
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| T |
28605504 |
agtgaaactaaactcaaaaatattatttcacctaatagatcattaatttttttttaagttcaactctccctctaaatttagggatatttttttccacgca |
28605603 |
T |
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| Q |
316 |
catataatttggaaaaatctagaaaaaatacaagttttttgccataccaatagataaatgtacttt |
381 |
Q |
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| T |
28605604 |
catatactttggaaaaatctagaaaaaatacaagttttttgccataccaatagataaatgtacttt |
28605669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 28654760 - 28654891
Alignment:
| Q |
23 |
agaagttttgggatgagaaacttcaagtatgtgagcaccatcaaagctgctcttgaaaaagaatgtcctttgacagtgtcatgcgctgacattgttgctc |
122 |
Q |
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| T |
28654760 |
agaagttttgggatgagaaatttcaagtatgtgaacaccatcaaagctgctgttgagaaagaatgtcccttgacagtgtcatgtgctgatattgttgctc |
28654859 |
T |
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| Q |
123 |
tttctgctagagacggtattgccagggtatgt |
154 |
Q |
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| T |
28654860 |
tttctgctagagacggtattgcaatggtatgt |
28654891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 28635478 - 28635610
Alignment:
| Q |
22 |
gagaagttttgggatgagaaacttcaagtatgtgagcaccatcaaagctgctcttgaaaaagaatgtcctttgacagtgtcatgcgctgacattgttgct |
121 |
Q |
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| T |
28635478 |
gagaagttttgggatgagaaatttcaagtatgtgaataccatcaaagcagctgtcgagaaagaatgtcccttgacagtgtcatgcgctgacattgtcgct |
28635577 |
T |
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| Q |
122 |
ctttctgctagagacggtattgccagggtatgt |
154 |
Q |
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| T |
28635578 |
ctatctgctagagacggtattgcaatggtatgt |
28635610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 28663159 - 28663293
Alignment:
| Q |
20 |
gagagaagttttgggatgagaaacttcaagtatgtgagcaccatcaaagctgctcttgaaaaagaatgtcctttgacagtgtcatgcgctgacattgttg |
119 |
Q |
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|||||||||| |||||| |||||||||||||||| | ||||||||||||||| | || ||||||||||| |||||||| ||||| || |||||||||| |
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| T |
28663159 |
gagagaagttccgggatgcgaaacttcaagtatgtaaaaaccatcaaagctgctgtggagaaagaatgtcccttgacagtatcatgtgccgacattgttg |
28663258 |
T |
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| Q |
120 |
ctctttctgctagagacggtattgccagggtatgt |
154 |
Q |
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| T |
28663259 |
ctctttccgctagagacggaattgccatggtatgt |
28663293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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