View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2516_low_1 (Length: 661)

Name: NF2516_low_1
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2516_low_1
NF2516_low_1
[»] chr8 (3 HSPs)
chr8 (1-643)||(31944671-31945312)
chr8 (340-497)||(14039296-14039453)
chr8 (316-497)||(18954243-18954424)
[»] chr5 (1 HSPs)
chr5 (316-510)||(8798164-8798358)


Alignment Details
Target: chr8 (Bit Score: 573; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Original strand, 31944671 - 31945312
Alignment:
Q  1 aaactactagacgatcaaaatcaataactgcatggaatctaaatccgcacgcctaactgagctgccaccaaattgtcatgaaaactgctgccacaactag 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31944671 aaactactagacgatcaaaatcaataactgcatggaatttaaatccgcacgcctaactgagctgccaccaaattgtcatgaaaactgctgccacaactag 31944770  T
Q  101 agacatccccttggttgacttatcagcatggccatgggcttgtcctgcccaaatgtccactccaaacgggagttttccggtccctgacttgatcgaactg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31944771 agacatccccttggttgacttatcagcatggccatgggcgtgtcctgcccaaatgtccactccaaacgggagttttccggtccctgacttgatcgaactg 31944870  T
Q  201 catgcactcaaatacatttctagttannnnnnnattttctacttaaaacaaaaaatcagaagattgaactacaatacaataccctttggaatgtgtagaa 300  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31944871 catgcactcaaatacatttctagttatttttt-attttctacttaaaacaaaaaatcagaagattgaactacaatacaataccctttggaatgtgtagaa 31944969  T
Q  301 cagaaagtaatgaggtaatctgcagaggaacaggtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaact 400  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31944970 cagaaagtaatgaggtaatctgcagaggaacaagtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaact 31945069  T
Q  401 gcgagtatgaacttggcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcacacgcgcttttacacgccac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  31945070 gcgagtatgaacttggcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcgcacgcgcttttacatgccac 31945169  T
Q  501 gctcttttcatcactcccttcaccttccgccgcaattttcacctttagttctgtcggacacgcgccgtttaagtccactaaacagcccgtggtcgtgcag 600  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  31945170 gctcttttcatcactcccttcttcttccgccgcaattttcacctttagttctgtcggacacgcgccatttaagtctactaaacagcccgtagtcgtgcag 31945269  T
Q  601 tttccaccgccgccacttggttccactgttatgggaaggttgt 643  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  31945270 tttccactgccgccacttggttccactgttatgggaaggttgt 31945312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 340 - 497
Target Start/End: Original strand, 14039296 - 14039453
Alignment:
Q  340 gtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttggcttacaagtctgcggagttccat 439  Q
    ||||| ||| ||||||||||||| |||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| || || |  ||||   | |    
T  14039296 gtgcttgtttcatcatcataagcgtagctataagcgcgaggacaagcactcttgaaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgt 14039395  T
Q  440 aagcgccattgcaacaatacaatggatcaccaaaggcttcacacgcgcttttacacgc 497  Q
    |||||||| | ||||||||   |||||| ||||| |||||||||||||||||||||||    
T  14039396 aagcgccactacaacaatattgtggatccccaaacgcttcacacgcgcttttacacgc 14039453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 316 - 497
Target Start/End: Original strand, 18954243 - 18954424
Alignment:
Q  316 taatctgcagaggaacaggtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttg 415  Q
    ||||||||||| | ||| | ||| ||||| |||||||||||||||||||| |||||||| |||||||| || ||||| ||||| || ||||| |||||||    
T  18954243 taatctgcagaagcacaagcgaaagtgcttgttccatcatcataagcataactataagcacgtggacatgcactcttaaagaattgtgagtacgaacttg 18954342  T
Q  416 gcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcacacgcgcttttacacgc 497  Q
    |||| || || |  |||||  | ||||||||||| ||||||||     |||| ||||| |||||||||||||||||||||||    
T  18954343 gcttgcatgtatctggagtagcgtaagcgccattacaacaatattgcagatctccaaacgcttcacacgcgcttttacacgc 18954424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 316 - 510
Target Start/End: Complemental strand, 8798358 - 8798164
Alignment:
Q  316 taatctgcagaggaacaggtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttg 415  Q
    ||||| ||||| | ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||| |||||||    
T  8798358 taatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgtggacacgcactcttaaaaaactgcgagtaggaacttg 8798259  T
Q  416 gcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcacacgcgcttttacacgccacgctcttttca 510  Q
    | ||||| || | ||| |  |||||||||||| |||| |||||    ||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  8798258 gtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgcttcacacgcgcttttacacgccacgctctcttca 8798164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University