View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2516_low_10 (Length: 369)
Name: NF2516_low_10
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 49666585 - 49666239
Alignment:
| Q |
11 |
agattatactcacacaaatattttaaaataagtttcatccttttagactaaacaatgaaacnnnnnnnnn---ttgacaaaacaaatcagaagatcctat |
107 |
Q |
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| T |
49666585 |
agattataatcacacaaatattttaaaataagtttcatccttttagactaaagaatgaaacaaaaaaaaaaattagacaaaacaaatcagaagatcctat |
49666486 |
T |
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| Q |
108 |
gagttcaacatattgatgaactttcacactccaaaccaatggatagaagttgtgtgctgaaagttatgtaaacggtacattacctatacccagtttggca |
207 |
Q |
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| T |
49666485 |
gagttcaacatattgatgaactttcacactccaaaccaatggatagaagttgtgtgctgaaagttatgtaaacggtacattacctatacccaatttggca |
49666386 |
T |
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| Q |
208 |
ttccgagtcagccctttaactgcaattaaataaaagaaacaatttagatttgacatatgaagataaagttgtgcagagaaaaatatggtttgctaattta |
307 |
Q |
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| T |
49666385 |
ttccgagtcagccctttaactgcaattaaataaaagaaacaattcagatttgacatatgaagataaagttgtgcagagaaaaatatggtttgctaattta |
49666286 |
T |
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| Q |
308 |
gtgttgcgtagaaaatattaaaaagtcaatcaatggaactcatctct |
354 |
Q |
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| T |
49666285 |
gtgttgcgtagaaaatattaaaaagtcaatcaatggaactcatctct |
49666239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 182 - 354
Target Start/End: Complemental strand, 49709967 - 49709796
Alignment:
| Q |
182 |
gtacattacctatacccagtttggcattccgagtcagcccttt---aactgcaattaaataaaagaaacaatttagatttgacatatgaagataaagttg |
278 |
Q |
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| T |
49709967 |
gtacattacctaaacccagtttggcattccaagtcagctcttttgtaactgcaattaga----agaaacaattcagatttgacatatgaagataaagttg |
49709872 |
T |
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| Q |
279 |
tgcagagaaaaatatggtttgctaatttagtgttgcgtagaaaatattaaaaagtcaatcaatggaactcatctct |
354 |
Q |
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| T |
49709871 |
tgcagagaaaaatatggtttgctaatttagtgttgcgtagaaaatattaaaaagtcaatcaatggaactcatctct |
49709796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 49214592 - 49214542
Alignment:
| Q |
241 |
aagaaacaatttagatttgacatatgaagataaagttgtgcagagaaaaat |
291 |
Q |
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| T |
49214592 |
aagaaacaattcagatttgacatataaagataaagttgtgcagagaaaaat |
49214542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 49214685 - 49214621
Alignment:
| Q |
159 |
gtgtgctgaaagttatgtaaacggtacattacctatacccagtttggcattccgagtcagccctt |
223 |
Q |
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|||| |||||| ||| ||||| || |||||||||||||||||||| |||||| |||||||||| |
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| T |
49214685 |
gtgttctgaaatttagttaaacagtgcattacctatacccagtttgacattcctggtcagccctt |
49214621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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