View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2516_low_14 (Length: 260)
Name: NF2516_low_14
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 28605975 - 28605822
Alignment:
| Q |
20 |
tacatagctttctttgctatcctttcgtccactcttcatttcaaagtttggacctcccaactaaatatacaaaacagacaaacatcaacatcaacatcta |
119 |
Q |
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| T |
28605975 |
tacatagctttctttgctatcctttcgtccactcttcatttcaaagtttggacctcccaacttaatatacagaacagacaaacatcaacatcaacatcta |
28605876 |
T |
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| Q |
120 |
aatataaattagtcatagtatttctaaaatgattttctaaaaataataacttcc |
173 |
Q |
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| T |
28605875 |
aatataaattagtcatagaatttctaaaatgattttctaaaaataataacttcc |
28605822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 28635883 - 28635790
Alignment:
| Q |
22 |
catagctttctttgctatcctttcgtccactcttcatttcaaagtttggacctcccaactaaatatacaaaacagacaaaca--tcaacatcaa |
113 |
Q |
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| T |
28635883 |
cataactttctttgctatcccttcttccactcttcatttcaatgtttggaccacccaactaaatatacaaaacataccaacaattcaacatcaa |
28635790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 28656392 - 28656318
Alignment:
| Q |
20 |
tacatagctttctttgctatcctttcgtccactcttcatttcaaagtttggacctcccaactaaatatacaaaac |
94 |
Q |
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| T |
28656392 |
tacatagctttctttgctatcccttcttccactcttcatttcaatgtttggaattcccaactaaatatacaaaac |
28656318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 28605791 - 28605743
Alignment:
| Q |
204 |
ggtgattaattagggaaacaatttgttttgttttagacaaagtgacaaa |
252 |
Q |
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| T |
28605791 |
ggtgattaattagggaaacaattttttttgttttagacaaagtgacaaa |
28605743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 28663432 - 28663370
Alignment:
| Q |
20 |
tacatagctttctttgctatcctttcgtccactcttcatttcaaagtttggacctcccaacta |
82 |
Q |
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||||| ||||||||||| |||| ||||||| ||||||||||||| ||||||||||||||||| |
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| T |
28663432 |
tacatggctttctttgccatcccttcgtcctgtcttcatttcaaattttggacctcccaacta |
28663370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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