View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2516_low_17 (Length: 234)
Name: NF2516_low_17
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 43612877 - 43613080
Alignment:
| Q |
18 |
aggactgcaagtaaattcaccaattcaatgttaaaaccatcaactgatcaaacaagaaaccagtaataaaattatatg-aagtacagacacatgcacgat |
116 |
Q |
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| T |
43612877 |
aggactgcaagtaaattcaccaattcaatgttaaaaccatcaactgatcaaacaagaaatcagtaataaaattatatgtaagtacagacacatacacgat |
43612976 |
T |
|
| Q |
117 |
ataacactaacacatgttagacattaaacgcactttcatttgaagtgttgatgctacatcggtaaaattatattttaagttgaaaacacagatcctagaa |
216 |
Q |
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| T |
43612977 |
atgacactgacacatgttagacattagacgcactttcatttgaagtgttgatgctacatccgtaaaattatattttaagttgaaaacacagatcctagag |
43613076 |
T |
|
| Q |
217 |
ttat |
220 |
Q |
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|||| |
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| T |
43613077 |
ttat |
43613080 |
T |
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