View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2516_low_18 (Length: 227)
Name: NF2516_low_18
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_low_18 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 9146767 - 9146978
Alignment:
| Q |
16 |
gttaacgaatgtgaccccataaaaggggtaaagttgtagaggaatagtgaggggcatgtaagccattcaatttattgtggtagttagaattgaacaataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9146767 |
gttaacgaatgtgaccccataaaaggggtaaagttgtagaggaatagtgaggggcatgtaagccattcaatttattgtggtagttagaattgaacaataa |
9146866 |
T |
|
| Q |
116 |
ggggattaaaaggaatatacgtataaccaagatacactttattgtaagcatgtggtgagtgtgtaaagagagatgcacattgcacaaataccttatacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9146867 |
ggggattaaaaggaatatacgtataaccaagatacactttattgtaagcatgtggtgaatgtgtaaagagagatgcacattgcacaaataccttatacct |
9146966 |
T |
|
| Q |
216 |
accagtcctatt |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9146967 |
accagtcctatt |
9146978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University