View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2516_low_3 (Length: 505)
Name: NF2516_low_3
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 194396 - 193927
Alignment:
| Q |
20 |
aaggaagcacatgattgaatccaaagcaaagcagaagggagggaaagggattgagcaacatcagaaacccatagaatgaaaggattattaatcaaacatg |
119 |
Q |
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| T |
194396 |
aaggaagcacatgattgaatccaaagcaaagcagaagggagggaaagggattgagcaacatcagaaacccatggaatgaaaggattgttaatcaaacatg |
194297 |
T |
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| Q |
120 |
agacaggtggattttgttgggagattatggtagggaggacttgtttcccaaccctctctagctgtggcaaatacacatccaagtcaagccgttttggttc |
219 |
Q |
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| T |
194296 |
agacaggtggattttgttgggagattatggtagggaggacttgtttcccaaccatctctagttgtggcaaatacacatccaagtcaagccgttttggttc |
194197 |
T |
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| Q |
220 |
attctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaacttccttctcttcttctaaatctctagcttttctcatctct |
319 |
Q |
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| T |
194196 |
atcctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaacttccttctcttcttctaaatctctagcttttctcatctct |
194097 |
T |
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| Q |
320 |
ttgccccagcttttctggtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaatagagggttcacgtgtccttgcgccggg |
419 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
194096 |
ttgccccagc-tttctagtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaatagagggttcacgtgtccttgcgccggg |
193998 |
T |
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| Q |
420 |
aacgatacaacatacaaggaacacatgctctacaatatcattatcacaccccatttttcctttaatctcattcatctc |
497 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
193997 |
aacg-------atacaaggaacacatgctctacaatatcattatcacaccccattttccctttaatctcattcatctc |
193927 |
T |
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