View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2516_low_5 (Length: 431)
Name: NF2516_low_5
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 50897447 - 50897853
Alignment:
| Q |
11 |
aaaataaaataaaataattaacgatataagctta-ttttgtctttttattttagataagcagcgtacnnnnnnnnnnggataaatacaagagaccactct |
109 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
50897447 |
aaaataaaataaaataattaacgatataagcttacttttgtctttttattttagataagcagcgtacttttttttttggataaatacaagagacccctct |
50897546 |
T |
|
| Q |
110 |
gttttaattctccaaagcatcaatatatccaagtttgcttttaatcattttaatttttatctctactcaaaatttcttgaaacgggccaagcctaatcca |
209 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
50897547 |
gttttaattctccaaagcatcaatacatccaagtttgcttttaatcattttaatttttatctatgctcaaaatttcttgaaacgggccaagcctaatcca |
50897646 |
T |
|
| Q |
210 |
ataggctaaaacacaaagttgggatgaacccaacccaattcaaacaaaatgcatcagagaatttcttttcccacccctcgaacttctcacatgccctcta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
50897647 |
ataggctaaaacacaaagttgggatgaacccaacccaattcaaacaaaatgcatcagagaatttcttttcccacccctcgaactactca-atgccctcta |
50897745 |
T |
|
| Q |
310 |
aaattcccatttccggggacaactatatgtgtaacggagtatagaactattggagaagctacatttagattataaactatatgtctaaggccggcaggtt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50897746 |
aaattcccatttccggggacaactatatgtgtaacggagtatagaactattggagaagctacatttagattataaactatatgtctaaggccggcaggtt |
50897845 |
T |
|
| Q |
410 |
ttgatttg |
417 |
Q |
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|||||||| |
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| T |
50897846 |
ttgatttg |
50897853 |
T |
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