View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2516_low_7 (Length: 408)
Name: NF2516_low_7
Description: NF2516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2516_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 40960889 - 40960504
Alignment:
| Q |
18 |
catctgtcatctgtttcacagaagaaaagctaacagttagtcgataatattcacacaatttaataggtaacataagattattggagtggagcaaaaagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960889 |
catctgtcatctgtttcacagaagaaaagctaacagttagtcgataatattcacacaatttaataggtaacataagattattggagtggagcaaaaagtg |
40960790 |
T |
|
| Q |
118 |
acctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaaccttcctggagtccaaatatttagtaaacaaccacggaatcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960789 |
acctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaaccttcctggagtccaaatatttagtaaacaaccacggaatcaa |
40960690 |
T |
|
| Q |
218 |
cagccagattaatctttcaaaagttacatgaagctatatgcatcagttaaaaaccaaacagcataggaggctttcgaaaacatctagcatttttgcggta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960689 |
cagccagattaatctttcaaaagttacatgaagctatatgcatcagttaaaaaccaaacagcataggaggctttcgaaaacatctagcatttttgcggta |
40960590 |
T |
|
| Q |
318 |
cacaagtagttttctgaaagtgcattctgagatatttatctaacatgtgaatcattttaagatgtaccaacaattcctttgctact |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40960589 |
cacaagtagttttctgaaagtgcattctgagatatttatctaacatgtgaatcattttaagatgtaccaacaattcctttactact |
40960504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 40947701 - 40947504
Alignment:
| Q |
18 |
catctgtcatctgtttcac-agaagaaaagctaacagttagtcgataatattcacacaatttaataggtaacataagattattggagtggagcaaaaagt |
116 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||| | ||| |||||||||||||||||||| || |||||||| ||| |||| ||||||||||||| |
|
|
| T |
40947701 |
catctgtcatctgtttcaccagtagaaaagccaacattcagtaaataatattcacacaatttaacagataacataaaattgttgggatggagcaaaaagt |
40947602 |
T |
|
| Q |
117 |
gacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaaccttcctggagtccaaatatttagtaaacaaccacggaat |
214 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||| || |||||||||||||||||| ||||||| | ||||||| |||||| |||||| |||| |
|
|
| T |
40947601 |
gacctgcatgtgttgtggctcatcgggctcatccttggatatttcctcagcagtcaaaccctcctggaattcaaatatccagtaaataaccacagaat |
40947504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 2662996 - 2663057
Alignment:
| Q |
121 |
tgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaaccttcctg |
182 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| | |||||||||||||||||| ||||| |
|
|
| T |
2662996 |
tgcatgtgttgtttctcatcaggctccttcttggttttttcctcagcagtcaaaccctcctg |
2663057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University