View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2517_high_12 (Length: 233)
Name: NF2517_high_12
Description: NF2517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2517_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 4591978 - 4592177
Alignment:
| Q |
16 |
atgaacatgataatgagattcaagatactgtgaaagaattctcattccctctactttacatattaaagtggtaggattcatattataaagttaatataca |
115 |
Q |
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| T |
4591978 |
atgaacatgataatgaaattcaagataccgtgaaagaattcttattccctctactttacatattaaaatggtaggattcatattataaagttaatataca |
4592077 |
T |
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| Q |
116 |
tgccatataattatccaatatgcatatattcaaaccattcagtttaggcactctagctgaagatgagttcacttacatcatcacttaaattcaatagggg |
215 |
Q |
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| T |
4592078 |
tgccatataattatccaatatgcatatattcaaaacattcagtttaggaactcttgctgaagatgagttcacttacatcatcacttaaattcaatagggg |
4592177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 4563437 - 4563567
Alignment:
| Q |
20 |
acatgataatgagattcaagatactgtgaaagaattctcattccctctactttacatatt-aaagtggtaggattcatattataaagttaatatacatgc |
118 |
Q |
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| T |
4563437 |
acatgataatggaattcaagatactgtgaaagaattcttattcacccaacttaacatatttaaacttgtaggatttatattataaagttaatatacatgc |
4563536 |
T |
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| Q |
119 |
catataattatccaatatgcatatattcaaa |
149 |
Q |
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| T |
4563537 |
catataattatccaatatgcatatattcaaa |
4563567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 4614019 - 4613968
Alignment:
| Q |
105 |
gttaatatacatgccatataattatccaatatgcatatattcaaaccattca |
156 |
Q |
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| T |
4614019 |
gttaatatacctgctatataattatccaatgtgcatatattcaaaccattca |
4613968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 4563598 - 4563657
Alignment:
| Q |
156 |
agtttaggcactctagctgaagatgagttcacttacatcatcacttaaattcaatagggg |
215 |
Q |
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| T |
4563598 |
agttcaggaactcttgctgaagatgacttcacttacatcagaacttaaattcaatagggg |
4563657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 4613933 - 4613888
Alignment:
| Q |
166 |
ctctagctgaagatgagttcacttacatcatcacttaaattcaata |
211 |
Q |
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| T |
4613933 |
ctcttgctgaagatcagttcatttacatcatcacttaaattcaata |
4613888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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