View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2517_high_2 (Length: 441)
Name: NF2517_high_2
Description: NF2517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2517_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 46909620 - 46909197
Alignment:
| Q |
1 |
aagtgttgcagatttaaggattgattttatttgttacctagtcatgtttagtttttacttatctgttgttactctaatgagagttaagttagttgtttag |
100 |
Q |
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| T |
46909620 |
aagtgttgcagatttaaggattgattttatttgttacctagtcatgtttagtttttacttatctgttgttactctaatgagagttaagttagttgtttag |
46909521 |
T |
|
| Q |
101 |
cctatcagttagtattattttacttctgtgtttttctgttaggtagttagggtcgttatccacctcttcactcttgtatatgtatattcacttttccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909520 |
cctatcagttagtattattttacttctgtgtttttctgttaggtagttagggtggttatccacctcttcactcttgtatatgtatattcacttttccatt |
46909421 |
T |
|
| Q |
201 |
cattcaatgaagtaataagaattatttaaaattttgtc--nnnnnnnngtattatttaaattgacaaactggccaccaaaagcgatgtcttattcactcc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46909420 |
cattcaatgaagtaataagaattatttaaaattttgtcaaaaaaaaaagtattatttaaattgacaaactggccaccaaaagcgatgtcttattca---c |
46909324 |
T |
|
| Q |
299 |
tcctatgagtggtaacaattatgaatcctgaagcagattaatgaaacacacaatccttgccaagaagttgaaattcattagaagatgaccctctcttaac |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909323 |
tcctatgagtggtaacaattatgaatcctgaagcagattaatgaaacacacaatccttaccaagaagttgaaattcattagaagatgaccctctcttaac |
46909224 |
T |
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| Q |
399 |
tctttgatgcttggaaaaggtgtaatg |
425 |
Q |
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| ||||||||||||||||||||||||| |
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| T |
46909223 |
tttttgatgcttggaaaaggtgtaatg |
46909197 |
T |
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