View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2517_high_5 (Length: 390)
Name: NF2517_high_5
Description: NF2517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2517_high_5 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 390
Target Start/End: Original strand, 28799939 - 28800306
Alignment:
| Q |
23 |
tgggggtgacagatgtgaagttggtgaatcttagccttttaacaaagtggaaatggaagatttttaaggaagatggctccttgtggaagagggtgcttga |
122 |
Q |
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| T |
28799939 |
tgggggtgacaaatgtgaagttggtgaatcttagccttttaacaaagtggaaatggaagctttttaaggaagatggttccttgtggaagagggtgcttga |
28800038 |
T |
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| Q |
123 |
agataaataaggtgaagggttgggtgatttgaaggagcccaatggggtggtaaggcattgacttgcctcgttgtggtggaaagatttgacaacgttggaa |
222 |
Q |
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| T |
28800039 |
agataaatacggtaaagggttgggtgattttagggagcccaatggggtggtaaggcatcgtcttgcctcgttgtggtggaaagatttgacaacgttggaa |
28800138 |
T |
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| Q |
223 |
gataggagcgggttgacttggtttaaatcagaggtggttggaaggatgggagactgaatgagtactagctttaggaaggataggtggagatccaatatcc |
322 |
Q |
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| T |
28800139 |
gataggagcgggttgacttggtttaaatcagaggtggttagaaggatgagagacggaatgagtactagcttttggaaggataggtggagatccaatatcc |
28800238 |
T |
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| Q |
323 |
ccttttgtaatctttttccgcgccttttttcaatttcaatacaaaaggatagtagtgtaggggaggtt |
390 |
Q |
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| T |
28800239 |
ccttttgtgatatttttccgcgccttttttcaatttcaatacaaaaggatagtagtgttggggaggtt |
28800306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 184 - 390
Target Start/End: Original strand, 17192276 - 17192479
Alignment:
| Q |
184 |
cttgcctcgttgtggtggaaagatttgacaacgttggaagataggagcgggttgacttggtttaaatcagaggtggttggaaggatgggagactgaatga |
283 |
Q |
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| T |
17192276 |
cttgcctctttgtggtggaaagatttgacaatgttagaggataggagtgggttgagttggttcaaatcggaggtggttagaaagatgagagaaagtatga |
17192375 |
T |
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| Q |
284 |
gtactagctttaggaaggataggtggagatccaatatccccttttgtaatctttttccgcgccttttttcaatttcaatacaaaaggatagtagtgtagg |
383 |
Q |
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| T |
17192376 |
gtact---ttttggaaggatagatggagatccgatatccccttttgtgatttttttccgcatctttgtcctttttcaatgcaaaaggatagtagtgcagg |
17192472 |
T |
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| Q |
384 |
ggaggtt |
390 |
Q |
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| T |
17192473 |
ggaggtt |
17192479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 23294189 - 23294078
Alignment:
| Q |
20 |
gtttgggggtgacagatgtgaagttggtgaatcttagccttttaacaaagtggaaatggaagatttttaaggaagatggctccttgtggaagagggtgct |
119 |
Q |
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| T |
23294189 |
gtttgggagttagagatgtgaagttgatgaatcttagccttcttgcaaaatggaagtggaagcttcataagggtgatggttctttgtggaagagggtgct |
23294090 |
T |
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| Q |
120 |
tgaagataaata |
131 |
Q |
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| T |
23294089 |
tgaagataaata |
23294078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 23293969 - 23293898
Alignment:
| Q |
240 |
ttggtttaaatcagaggtggttggaaggatgggagactgaatgagtactagctttaggaaggataggtggag |
311 |
Q |
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| T |
23293969 |
ttggttcatatcaaaggtggttagaaagatgcgagatggaatgagtactagtttttggaaggataggtggag |
23293898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 32775225 - 32775181
Alignment:
| Q |
34 |
gatgtgaagttggtgaatcttagccttttaacaaagtggaaatgg |
78 |
Q |
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| T |
32775225 |
gatgtgaagttggtgaatttgagccttttggcaaagtggaaatgg |
32775181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 184 - 390
Target Start/End: Original strand, 4281808 - 4282014
Alignment:
| Q |
184 |
cttgcctcgttgtggtggaaagatttgacaacgttggaagataggagcgggttgacttggtttaaatcagaggtggttggaaggatgggagactgaatga |
283 |
Q |
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| T |
4281808 |
cttgcctctttgtggtggaaagatttgacaacgttggaggagagaagtgggccgacttggttctactcggaggtggttagaaggatgggagatggaatga |
4281907 |
T |
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| Q |
284 |
gtactagctttaggaaggataggtggagatccaatatccccttttgtaatctttttccgcgccttttttcaatttcaatacaaaaggatagtagtgtagg |
383 |
Q |
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| T |
4281908 |
gcactagtttttggaatgatagatggagatcctatacccccttttgtgatctttttctgcgtcttttttttatttgaacgaaaaagaatagtagtgtggg |
4282007 |
T |
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| Q |
384 |
ggaggtt |
390 |
Q |
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||||||| |
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| T |
4282008 |
ggaggtt |
4282014 |
T |
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