View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2517_high_6 (Length: 381)
Name: NF2517_high_6
Description: NF2517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2517_high_6 |
 | |
|
| [»] scaffold0054 (5 HSPs) |
| | |
|
Alignment Details
Target: scaffold0054 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 38137 - 37798
Alignment:
| Q |
18 |
cagattggttaactcagagaggggcgaatcgggaataataaacaaatagtgtatgggggagaagaaattctcatatatttttgtaagagaaaataaaacg |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38137 |
cagatttgttaactcagagaggggcgaatcgggaataataaacaaatagtgtatggggcagaagaaattctcatatatttttgtaagagaaaataaaacg |
38038 |
T |
|
| Q |
118 |
tatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38037 |
tatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagaaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgca |
37938 |
T |
|
| Q |
218 |
agcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaatggtgagttcatttagagaataaatcaactatgtg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37937 |
agcaaagttctactctcttcgtcttgtgttgatgaagaagaaaccactccctgcaacaaatgcaatggtgagttcatctagagaataaatcaactatgtg |
37838 |
T |
|
| Q |
318 |
tacacctcaaataaatttcttagaagttgtgtttcaagct |
357 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
37837 |
tatacctcaaataaatttcttagaagttgtatttctagct |
37798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 76 - 287
Target Start/End: Complemental strand, 41023 - 40812
Alignment:
| Q |
76 |
gagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagatt |
175 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || ||||| | ||||||||||| |||||| ||||| || | | |||| ||||| || |||||||||| |
|
|
| T |
41023 |
gagaagaaattctcatatattttttgaagagacaaaaaaacttgtgttaactattaggagattgaaaacatttacaaaaattaaaaaagaaaaggagatt |
40924 |
T |
|
| Q |
176 |
gagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaaca |
275 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||| |||| |||| |||||| | |||||||| |
|
|
| T |
40923 |
gagaaggttagaggttacttagggttaggattgcaatttgcaagcaaagttcgattctcttcgtgtcgtgtcgatggagaacaaatcaacggctgcaaca |
40824 |
T |
|
| Q |
276 |
aatgcaatggtg |
287 |
Q |
| |
|
||||||| |||| |
|
|
| T |
40823 |
aatgcaaaggtg |
40812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 49671 - 49523
Alignment:
| Q |
93 |
tatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggtta |
192 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
49671 |
tatttttttaagagaaaacaaaacatatgttaactattgggagatcgaaaatatttccaaaaggtaaaatagaaaaggagattgagaaggtcattggtta |
49572 |
T |
|
| Q |
193 |
cttagggttaggattgcaatttgcaagcaaagttctactctcttcgtct |
241 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
49571 |
cttagggttcagattgcaatatacaagcaaagttcgactctcttcgtct |
49523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 34572 - 34455
Alignment:
| Q |
170 |
gagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcct |
269 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||| ||| |||| |||||||||||||||| | || |
|
|
| T |
34572 |
gagattgagaaggtcagtggttactttgggttaggattgaaatttgcaagcaaagttcgattctcttcatctcgtgtcgatgaagaagaaatcagcggct |
34473 |
T |
|
| Q |
270 |
gcaacaaatgcaatggtg |
287 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
34472 |
gcaacaaatgcaaaggtg |
34455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 272 - 365
Target Start/End: Complemental strand, 49520 - 49427
Alignment:
| Q |
272 |
aacaaatgcaatggtgagttcatttagagaataaatcaactatgtgtacacctcaaataaatttcttagaagttgtgtttcaagctcgtctgtg |
365 |
Q |
| |
|
||||||||||| |||||| |||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520 |
aacaaatgcaaaggtgagctcatctagagaagaagtcaactatgtgtatacctcaaataaatttcttagaagttgtgtttcaagctcgtctgtg |
49427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 132 - 282
Target Start/End: Original strand, 13338974 - 13339124
Alignment:
| Q |
132 |
ggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctact |
231 |
Q |
| |
|
|||||| |||||||| ||| || | ||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| | | ||| |
|
|
| T |
13338974 |
ggagattgaaaatatttccaaacattaaaaaagaaaaggagattgagaaggttagtggttacttagggttagaattgcaatttgcaagtaaaatccgact |
13339073 |
T |
|
| Q |
232 |
ctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaa |
282 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||| | ||||||||| ||||| |
|
|
| T |
13339074 |
ctcttcgtctcgtgtcgatggagaagaaatcagaggctgcaacaattgcaa |
13339124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University