View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2517_low_10 (Length: 238)
Name: NF2517_low_10
Description: NF2517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2517_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51856880 - 51856643
Alignment:
| Q |
1 |
aattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacagtttatcttctagatctagttccc |
100 |
Q |
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| T |
51856880 |
aattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacaggttatcttctagatctagttccc |
51856781 |
T |
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| Q |
101 |
tttctttattt----------------gtgctgtgttaagaaaaattaaagtttaatttttattattaaagtttgaagggtaacaagccactcttatatt |
184 |
Q |
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| T |
51856780 |
tttctttattttccctttttcttatttgtgctgtgttaagaaaaattaaagtttaatttttattattaaagtttgaagggtaacaagccactcttatatt |
51856681 |
T |
|
| Q |
185 |
ggttgttgattattaaacagggaacttaataataagac |
222 |
Q |
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| T |
51856680 |
ggttgttgattattaaacagggaacataataataagac |
51856643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 185
Target Start/End: Complemental strand, 51856569 - 51856538
Alignment:
| Q |
154 |
agtttgaagggtaacaagccactcttatattg |
185 |
Q |
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| T |
51856569 |
agtttgaagggtaacaagccactcttatattg |
51856538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 8945924 - 8945724
Alignment:
| Q |
1 |
aattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacagtttatcttctagatctagttccc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8945924 |
aattataacggcttcaaagcacatcgtgaaggagctaaatgatttttagaacgacccttcattatcatgtagtacaggttatcttctagatctagttccc |
8945825 |
T |
|
| Q |
101 |
tttcttt----------------atttgtgctgtgttaagaaaaattaaagtttaatttttattattaaagtttgaagggtaacaagccactcttatatt |
184 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945824 |
tttctttattttccctttttcttatttgtgctgtgttaagaaaaattaaagtttgatttttattattaaagtttgaagggtaacaagccactcttatatt |
8945725 |
T |
|
| Q |
185 |
g |
185 |
Q |
| |
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| |
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|
| T |
8945724 |
g |
8945724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 43263130 - 43262898
Alignment:
| Q |
1 |
aattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacagtttatcttctagatctagttccc |
100 |
Q |
| |
|
|||||| |||||||||||| |||||||||| |||||||| ||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
43263130 |
aattattacggcttcaaagtgcatcgtgaatgagctaaaggatttgtagaaggacccttcaacatcatgcagtacaggttatcttctagatctagttccc |
43263031 |
T |
|
| Q |
101 |
tttcttt----------------atttgtgctgtgtt-aagaaaaattaaagtttaatttttattattaaagtttgaagggtaacaagccactcttatat |
183 |
Q |
| |
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||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
43263030 |
tttctttattttccctttttcttatttgtgctgtgttaaaaaaaaagaaaagtttaatttttattattaaagtttgaagggtaacaatccactctcatat |
43262931 |
T |
|
| Q |
184 |
tggttgttgattattaaacagggaacttaataa |
216 |
Q |
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||||||||||||||| |||||| ||| |||||| |
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|
| T |
43262930 |
tggttgttgattattgaacaggcaacataataa |
43262898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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