View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2517_low_3 (Length: 427)
Name: NF2517_low_3
Description: NF2517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2517_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 238 - 423
Target Start/End: Original strand, 26439894 - 26440079
Alignment:
| Q |
238 |
caccccatatgtacgtaaaataatattttatagaacaaactttagagcttttcttatactctggttttcgaagttgtaacaaaaaatgatggctatggaa |
337 |
Q |
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| T |
26439894 |
caccccatatgtacgtaaaataatattttatagaacaaactttagagcttttcttatactctggttttcgaagttgtaacaaaaaatgatggctatggaa |
26439993 |
T |
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| Q |
338 |
tgtataagcaattgctgaacgaacatttgcttataacaaggaacatagggattgcactattaaaaaatgggaaatgttaacgagtg |
423 |
Q |
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| T |
26439994 |
tgtataagcaattgctgaacgaacatttgcttataacaaggaacatatggaatgtactattaaaaaatgggaaatgttaacgagtg |
26440079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 26439632 - 26439724
Alignment:
| Q |
6 |
aaggttgaggccaatcacgtagcctgattttatgtcacaactcactccatcccacaagcaacaattcgtacaatttttccatgattttttcct |
98 |
Q |
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| T |
26439632 |
aaggtcgatgccaatcacgtagcctgattttgtgtcacaactcactccatcccacaagcaacaattcgtaccatttttccatgattttgtcct |
26439724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 26452010 - 26452099
Alignment:
| Q |
89 |
attttttcctaatgaaggcaaccttaagactaaaagaattctttaattcaagcaaggcagagtaatcatcatggttgcacaatggcacca |
178 |
Q |
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| T |
26452010 |
atttcttcctaatgaaggaaacattaagactaaaagaattcttgaattcaagcaaggcagaggaatcatcatggttgcacaacggcacca |
26452099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 26439752 - 26439834
Alignment:
| Q |
96 |
cctaatgaaggcaaccttaagactaaaagaattctttaattcaagcaaggcagagtaatcatcatggttgcacaatggcacca |
178 |
Q |
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| T |
26439752 |
cctaatgaaggaaacattaggactaaaagaattcttgaattcaagcaaggcagaggaatcatcatggttgcacaatggcacca |
26439834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 26451913 - 26451989
Alignment:
| Q |
22 |
acgtagcctgattttatgtcacaactcactccatcccacaagcaacaattcgtacaatttttccatgattttttcct |
98 |
Q |
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| T |
26451913 |
acgtagcctgattttgtgtcacaactaactccatcccacaagcaacaattcgtaccgtttttccatgattttgtcct |
26451989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 26452170 - 26452275
Alignment:
| Q |
253 |
taaaataatattttatagaacaaactttagagcttttcttatactctggttttcgaagttgtaaca-aaaaatgatggctatggaatgtataagcaattg |
351 |
Q |
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| T |
26452170 |
taaaaaaatattttacaaaacaaacttcagagcttttctcatactttagttttagaagttgtaatacaaaaaagattgctatggaatgtatatgcaattg |
26452269 |
T |
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| Q |
352 |
ctgaac |
357 |
Q |
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||||| |
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| T |
26452270 |
atgaac |
26452275 |
T |
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