View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2517_low_4 (Length: 402)
Name: NF2517_low_4
Description: NF2517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2517_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 38323713 - 38323433
Alignment:
| Q |
10 |
ataatactaatgcaactgcatgttaacatcagtccaggaaaacctcccaggccttacaaaaaatctgccatctcagtaaataataactatattgaatggc |
109 |
Q |
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| T |
38323713 |
ataatactaatgcaactgcatgttaacatcagtccaggaaaacctcccaggccttacaaaaaatctgccatctcaggaaataataactatattgaatggc |
38323614 |
T |
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| Q |
110 |
agcacaccagtatatctcaatgagccataacaataagctttaagcaagtaacgctactaaacaacaaaagagatagcagaaattgatgcagggatcacaa |
209 |
Q |
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| T |
38323613 |
agtacaccagtatatctcaatgagccataacaataagctttaagcaagtaacgctactaaacaacaaaagagatagcagaaattgatgcagggatcacaa |
38323514 |
T |
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| Q |
210 |
ataaacaccaaagccttttgattccttgacactgacaaaaatactaaggctgcccttccaaacatacaaaaccaattcaag |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38323513 |
ataaacaccaaagccttttgattccttgacactgacaaaaatactaaggctgcccttccaaacaaacaaaaccaattcaag |
38323433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 38323346 - 38323309
Alignment:
| Q |
289 |
aggagccgccgaactaacacccagaaacagacaatgaa |
326 |
Q |
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| T |
38323346 |
aggagccgccgaactaacacccagaaacagacaatgaa |
38323309 |
T |
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