View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2517_low_8 (Length: 308)

Name: NF2517_low_8
Description: NF2517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2517_low_8
NF2517_low_8
[»] chr7 (13 HSPs)
chr7 (1-297)||(1038859-1039157)
chr7 (35-95)||(30655598-30655658)
chr7 (35-92)||(46691848-46691905)
chr7 (35-95)||(42598058-42598118)
chr7 (35-90)||(36615808-36615863)
chr7 (36-87)||(33320774-33320825)
chr7 (35-92)||(31424775-31424832)
chr7 (35-86)||(49035862-49035913)
chr7 (41-95)||(32679023-32679077)
chr7 (35-88)||(19471096-19471149)
chr7 (35-88)||(22197744-22197797)
chr7 (35-88)||(22240024-22240077)
chr7 (35-89)||(41702938-41702992)
[»] chr1 (14 HSPs)
chr1 (110-232)||(13922595-13922717)
chr1 (35-92)||(12173026-12173083)
chr1 (35-92)||(19472872-19472929)
chr1 (35-92)||(26990673-26990730)
chr1 (36-92)||(38548750-38548806)
chr1 (46-92)||(28447802-28447848)
chr1 (37-87)||(42442015-42442065)
chr1 (35-88)||(8462976-8463029)
chr1 (35-88)||(26385035-26385087)
chr1 (110-232)||(14314999-14315110)
chr1 (35-82)||(46757378-46757425)
chr1 (37-91)||(31833965-31834019)
chr1 (260-297)||(14155167-14155204)
chr1 (43-89)||(43460785-43460831)
[»] chr8 (11 HSPs)
chr8 (35-91)||(40930834-40930890)
chr8 (35-95)||(13959219-13959279)
chr8 (35-87)||(25829272-25829324)
chr8 (35-90)||(38086419-38086474)
chr8 (35-92)||(22839326-22839383)
chr8 (35-92)||(24200625-24200682)
chr8 (43-95)||(584135-584187)
chr8 (35-92)||(5200485-5200542)
chr8 (58-95)||(7845135-7845172)
chr8 (48-92)||(30836131-30836175)
chr8 (35-95)||(44362929-44362989)
[»] chr3 (11 HSPs)
chr3 (35-90)||(28934741-28934796)
chr3 (36-91)||(10454357-10454412)
chr3 (35-92)||(31525435-31525492)
chr3 (35-92)||(43073049-43073106)
chr3 (35-92)||(52076137-52076194)
chr3 (35-91)||(44656229-44656285)
chr3 (35-87)||(47820974-47821026)
chr3 (37-90)||(20701222-20701275)
chr3 (35-92)||(9358752-9358809)
chr3 (37-94)||(28957022-28957079)
chr3 (35-95)||(8431418-8431478)
[»] chr6 (8 HSPs)
chr6 (37-95)||(11546841-11546899)
chr6 (35-92)||(6575797-6575854)
chr6 (36-87)||(34761236-34761287)
chr6 (43-92)||(33112718-33112767)
chr6 (49-88)||(10246996-10247035)
chr6 (35-92)||(15859171-15859230)
chr6 (45-95)||(14459932-14459982)
chr6 (35-88)||(33984834-33984887)
[»] chr5 (8 HSPs)
chr5 (35-87)||(23172981-23173033)
chr5 (36-89)||(22887284-22887337)
chr5 (45-92)||(9597757-9597804)
chr5 (36-87)||(9931804-9931855)
chr5 (35-95)||(10431132-10431192)
chr5 (37-89)||(25539896-25539947)
chr5 (40-92)||(42241592-42241644)
chr5 (35-90)||(819134-819189)
[»] chr2 (5 HSPs)
chr2 (35-91)||(41419692-41419748)
chr2 (37-94)||(38908743-38908800)
chr2 (36-91)||(14732344-14732399)
chr2 (38-92)||(22649068-22649122)
chr2 (35-82)||(41378216-41378263)
[»] chr4 (9 HSPs)
chr4 (34-92)||(15186984-15187042)
chr4 (35-91)||(16572142-16572198)
chr4 (35-92)||(25641272-25641329)
chr4 (43-90)||(16662312-16662359)
chr4 (37-92)||(47571574-47571629)
chr4 (35-92)||(32183352-32183410)
chr4 (40-95)||(55133108-55133160)
chr4 (56-90)||(45511407-45511441)
chr4 (35-72)||(42390795-42390832)
[»] scaffold0209 (1 HSPs)
scaffold0209 (43-95)||(12895-12947)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 1039157 - 1038859
Alignment:
Q  1 attgcaaccgattttcccttgtttgnnnnnnnnatccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgtttgnnnn 100  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  1039157 attgcaaccgattttcccttgtttgttttttttatccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgtttgaaaa 1039058  T
Q  101 nnnnnnnnn--tgatttattggttgatgtcaaaattttgtagtactaaactacaaatccttgttggttatagcttggcttatacaatggagttgacttgt 198  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039057 aaaaaaaaaaatgatttattggttgatgtcaaaattttgtagtactaaactacaaatccttgttggttatagcttggcttatacaatggagttgacttgt 1038958  T
Q  199 ggtgagatttactgcccttggtacataacacattcagtctattaatctttacttgtggcactattgtttgattaacacttttcatttgattttagaatt 297  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1038957 ggtgagatttactgtccttggtacataacacattcagtctattaatctttacttgtggcactattgtttgattaacacttttcatttgattttagaatt 1038859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 30655658 - 30655598
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  30655658 tccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatattttgccgttt 30655598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 46691905 - 46691848
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  46691905 tccacccgagcttgttagtgcttcttgcacgggcttgttggttaataatattttgccg 46691848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 42598058 - 42598118
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  42598058 tccacccaagcttattagtgcttcttgcacgggtttgttggttaataatattttgccgttt 42598118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 36615863 - 36615808
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 90  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  36615863 tccacccgagcttattagtgcttcttgcacgggcttgttgggtaataatattttgc 36615808  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 33320774 - 33320825
Alignment:
Q  36 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 87  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  33320774 ccacccgagcttattagtgcttcttgcacgggcttgttggttaacaatattt 33320825  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 31424832 - 31424775
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||    
T  31424832 tccacccaagcttattagtgtttcttgcacgggtttgttggttaataatattttgccg 31424775  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 49035913 - 49035862
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatt 86  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  49035913 tccacccgagcttattagtgcttcttgtacggacttgttggttaataatatt 49035862  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 32679023 - 32679077
Alignment:
Q  41 cgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||    
T  32679023 cgagcttattagtgcgtcttgcacgggcttgttggttaataaaatttagccgttt 32679077  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 19471149 - 19471096
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 88  Q
    |||||||||||||||||||||  ||||||| ||||||| | |||||||||||||    
T  19471149 tccacccgagcttattagtgcaccttgcaccggcttgttgcttaataatatttt 19471096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 22197744 - 22197797
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 88  Q
    ||||||||||||| |||||||  ||||||||| ||||| |||||||||||||||    
T  22197744 tccacccgagctttttagtgcaccttgcacggacttgttggttaataatatttt 22197797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 22240077 - 22240024
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 88  Q
    ||||||||||||| |||||||  ||||||||| ||||| |||||||||||||||    
T  22240077 tccacccgagctttttagtgcaccttgcacggacttgttggttaataatatttt 22240024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 41702938 - 41702992
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttg 89  Q
    ||||||| | |||||||||||| |||||||||||| || |||| |||||||||||    
T  41702938 tccacccaaacttattagtgctccttgcacgggctagttggttgataatattttg 41702992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 13922717 - 13922595
Alignment:
Q  110 tgatttattggttgatgtcaaaattttgtagtactaaactacaaatccttgttggttatagcttggcttatacaatggagttgacttgtggtgagattta 209  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  13922717 tgatttgttagttgatgtctaaattttgtagtactaaactacaaatccttgttggttatagctcggcttatacagtggagttgacttgtggtgagattta 13922618  T
Q  210 ctgcccttggtacataacacatt 232  Q
    |||||| ||||||||||||||||    
T  13922617 ctgcccctggtacataacacatt 13922595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 12173026 - 12173083
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12173026 tccacccaagcttattagtgcttcttgcacgggcttgttggttaataatattttgccg 12173083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 19472872 - 19472929
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  19472872 tccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatattttgccg 19472929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 26990673 - 26990730
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  26990673 tccacccaagcttattagtgcttcttgcacgggcttattggttaataatattttgccg 26990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 38548750 - 38548806
Alignment:
Q  36 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  38548750 ccacccgagcttattagtgcgtcttgcacgggtttgttggttaataatattttgccg 38548806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 28447802 - 28447848
Alignment:
Q  46 ttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  28447802 ttattagtgcttcttgcacgggcttgttggttaataatattttgccg 28447848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 42442065 - 42442015
Alignment:
Q  37 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 87  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  42442065 cacccgagcttattagtgcttcttgcacggacttgttggttaataatattt 42442015  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 8463029 - 8462976
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 88  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||||||    
T  8463029 tccacccgagctaattagtgcttcttgcacgagcttgttggttaataatatttt 8462976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 26385035 - 26385087
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 88  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  26385035 tccacccaagcttattagcgcttcttg-acgggcttgtcggttaataatatttt 26385087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 14314999 - 14315110
Alignment:
Q  110 tgatttattggttgatgtcaaaattttgtagtactaaactacaaatccttgttggttatagcttggcttatacaatggagttgacttgtggtgagattta 209  Q
    ||||||||||||||||||| |||||| |||| || ||||| ||||||||||||| ||           ||| |  ||||||||| ||||||||| |||||    
T  14314999 tgatttattggttgatgtcgaaatttagtagcacaaaacttcaaatccttgttgatt-----------tatgcggtggagttgaattgtggtgaaattta 14315087  T
Q  210 ctgcccttggtacataacacatt 232  Q
    |||||| ||||||||||||||||    
T  14315088 ctgcccctggtacataacacatt 14315110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 46757378 - 46757425
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataa 82  Q
    |||||| |||||||||||||| |||||||||||||||| |||||||||    
T  46757378 tccacctgagcttattagtgcatcttgcacgggcttgttggttaataa 46757425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 31833965 - 31834019
Alignment:
Q  37 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 91  Q
    ||||||||||| ||||||| ||||||||||  |||| ||||||||||||||||||    
T  31833965 cacccgagcttgttagtgcatcttgcacggatttgttggttaataatattttgcc 31834019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 14155167 - 14155204
Alignment:
Q  260 tattgtttgattaacacttttcatttgattttagaatt 297  Q
    |||||||||||||||||||||||||| |||||||||||    
T  14155167 tattgtttgattaacacttttcattttattttagaatt 14155204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 43460785 - 43460831
Alignment:
Q  43 agcttattagtgcttcttgcacgggcttgtcggttaataatattttg 89  Q
    ||||||||||||||||| |||| | ||||| ||||||||||||||||    
T  43460785 agcttattagtgcttctcgcacagacttgttggttaataatattttg 43460831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 40930890 - 40930834
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 91  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40930890 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattttgcc 40930834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 13959279 - 13959219
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  13959279 tccacccgagcttattattgcttcttgcacgggcttgttggctaataatattttgccgttt 13959219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 25829324 - 25829272
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 87  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25829324 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattt 25829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 38086474 - 38086419
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 90  Q
    ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  38086474 tccacccgagcttattagtgcgtcttgcacgggcttattggttaataatattttgc 38086419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 22839326 - 22839383
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    |||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||    
T  22839326 tccatccgaacttattagtgcgtcttgcacgggcttgttggttaataatattttgccg 22839383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 24200682 - 24200625
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  24200682 tccacccaagcttattagtgcttcttgcacggacttgttgattaataatattttgccg 24200625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 584187 - 584135
Alignment:
Q  43 agcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  584187 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgttt 584135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 5200542 - 5200485
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| | |||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  5200542 tccacccaaacttattagtgtttcttgcacggacttgttggttaataatattttgccg 5200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 7845135 - 7845172
Alignment:
Q  58 cttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7845135 cttgcacgggcttgttggttaataatattttgccgttt 7845172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 30836175 - 30836131
Alignment:
Q  48 attagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||    
T  30836175 attagtgcttctcgcacgagcttgttggttaataatattttgccg 30836131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 44362989 - 44362929
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    |||| |||| |||||||||||||||||||| || |||| ||||||||||| ||| ||||||    
T  44362989 tccatccgaacttattagtgcttcttgcacaggattgttggttaataataattttccgttt 44362929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 28934796 - 28934741
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 90  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28934796 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattttgc 28934741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 10454357 - 10454412
Alignment:
Q  36 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 91  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10454357 ccacccgagcttattagtgctccttgcacgggcttgttggttaataatattttgcc 10454412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 31525435 - 31525492
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  31525435 tccacccaagcttattagtgcttcttgcacaggcttgttggttaataatattttgccg 31525492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 43073106 - 43073049
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  43073106 tccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccg 43073049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 52076137 - 52076194
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  52076137 tccacccgagcttattagtgcttctcgcacgggcttgttggttagtaatattttgccg 52076194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 44656285 - 44656229
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 91  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  44656285 tccacccgagcttatttgtgcatcttgcacgggcttgttggttaataatattttgcc 44656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 47820974 - 47821026
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 87  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  47820974 tccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatattt 47821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 20701222 - 20701275
Alignment:
Q  37 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 90  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  20701222 cacccgagcttattagtgcttcttgtacgggctcgttggttaataatattttgc 20701275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 9358809 - 9358752
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| ||||||||||| ||||| |||||||||||| || ||||||||||||||||    
T  9358809 tccacccaagcttattagtacttctcgcacgggcttgttgggtaataatattttgccg 9358752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 28957022 - 28957079
Alignment:
Q  37 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgtt 94  Q
    ||||||||||||| |||| ||||||||||| ||||| |||||||||||||||| ||||    
T  28957022 cacccgagcttatcagtgtttcttgcacggacttgttggttaataatattttgtcgtt 28957079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 8431478 - 8431418
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    |||| |||||||| ||||||| |||||||||||||| | | | ||||||||||||||||||    
T  8431478 tccatccgagcttgttagtgcatcttgcacgggcttcttgatcaataatattttgccgttt 8431418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 11546841 - 11546899
Alignment:
Q  37 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  11546841 cacccgagcttattagtgctacttgcacgggcttgtcagttaataatattttgccgttt 11546899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 6575797 - 6575854
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||    
T  6575797 tccacccgaacttattagtgcttcttgcacgggcttgttgattaataatattttgccg 6575854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 34761236 - 34761287
Alignment:
Q  36 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 87  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34761236 ccacccgagcttattagtgctacttgcacgggcttgtcgtttaataatattt 34761287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 33112767 - 33112718
Alignment:
Q  43 agcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  33112767 agctttttagtgcgtcttgcacgggcttgttggttaataatattttgccg 33112718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 10246996 - 10247035
Alignment:
Q  49 ttagtgcttcttgcacgggcttgtcggttaataatatttt 88  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  10246996 ttagtgcttcttgcacgggcttgttggttaataatatttt 10247035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 15859171 - 15859230
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttg--tcggttaataatattttgccg 92  Q
    |||||||||||||||||||||  ||||||||||||||  | | |||||||||||||||||    
T  15859171 tccacccgagcttattagtgcgccttgcacgggcttgttttgattaataatattttgccg 15859230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 14459932 - 14459982
Alignment:
Q  45 cttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    |||||||||||| || ||||||||| || || |||||||||||||||||||    
T  14459932 cttattagtgctcctcgcacgggctcgttggctaataatattttgccgttt 14459982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 33984834 - 33984887
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 88  Q
    |||||||||||||||||||||| ||   |||||||||| || ||||||||||||    
T  33984834 tccacccgagcttattagtgctcctcatacgggcttgttggctaataatatttt 33984887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 23173033 - 23172981
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 87  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23173033 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattt 23172981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 22887284 - 22887337
Alignment:
Q  36 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttg 89  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  22887284 ccacccgagcttattagtgcatctcgcacgggcttgttggttaataatattttg 22887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 9597804 - 9597757
Alignment:
Q  45 cttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9597804 cttattagtgcttcttgcacaggcttgttggttaataatattttgccg 9597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 9931855 - 9931804
Alignment:
Q  36 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 87  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||||||    
T  9931855 ccacccaagcttgttagtgcttcttgcacgggcttgttggttaataatattt 9931804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 10431132 - 10431192
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||||||| ||||||| ||||||||||||||| |||| | ||||||||||||| ||||||    
T  10431132 tccacccgaacttattaatgcttcttgcacgggtttgttgattaataatatttttccgttt 10431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 25539896 - 25539947
Alignment:
Q  37 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttg 89  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  25539896 cacccgagcttattaatgcttcttgcacgggcttgttgg-taataatattttg 25539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 42241644 - 42241592
Alignment:
Q  40 ccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    |||||||||||||||| |||||| ||| ||| | |||||||||||||||||||    
T  42241644 ccgagcttattagtgcatcttgcccggacttattggttaataatattttgccg 42241592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 819189 - 819134
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 90  Q
    ||||||||| |||||||||||||||| ||||| ||| | || ||||||||||||||    
T  819189 tccacccgaacttattagtgcttcttacacggacttattgggtaataatattttgc 819134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 41419692 - 41419748
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 91  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  41419692 tccacccgagcttattagtgcatcttgcacgggcttgttggttaataatattttgcc 41419748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 38908743 - 38908800
Alignment:
Q  37 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgtt 94  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||    
T  38908743 cacccgagcttattagtgcatcttgcacggccttattggttaataatattttgccgtt 38908800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 14732399 - 14732344
Alignment:
Q  36 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 91  Q
    ||||||||||||||||||||  || |||||||||||| ||||||||||||||||||    
T  14732399 ccacccgagcttattagtgcacctcgcacgggcttgttggttaataatattttgcc 14732344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 22649122 - 22649068
Alignment:
Q  38 acccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  22649122 acccaagcttattagtacttcttgcacgggcttgttggttaataaaattttgccg 22649068  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 41378263 - 41378216
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataa 82  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  41378263 tccacccgagcttattagtgcatctttcacgggcttgttggttaataa 41378216  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 15187042 - 15186984
Alignment:
Q  34 atccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    |||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  15187042 atccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccg 15186984  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 16572142 - 16572198
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 91  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  16572142 tccacccgagcttattagtgcatctcgcacgggcttgttggttaataatattttgcc 16572198  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 25641329 - 25641272
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  25641329 tccacccaagctttttagtgcttcttgcacgggcttgttggttaataacattttgccg 25641272  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 16662359 - 16662312
Alignment:
Q  43 agcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 90  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  16662359 agcttattagtgcttctcgcacgggcttgttggttaataatattttgc 16662312  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 47571629 - 47571574
Alignment:
Q  37 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 92  Q
    |||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||    
T  47571629 cacccgagcttattagtgctccttccacgggtttgttggttaataatattttgccg 47571574  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 32183352 - 32183410
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttg-tcggttaataatattttgccg 92  Q
    |||||||||||||||||||||  |||||||||||||| | |||||||||||||||||||    
T  32183352 tccacccgagcttattagtgcgccttgcacgggcttgtttggttaataatattttgccg 32183410  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 55133160 - 55133108
Alignment:
Q  40 ccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||| |||||||||||||||||||||||||   |||||||||||||||| |||||    
T  55133160 ccgagtttattagtgcttcttgcacgggctt---ggttaataatattttgtcgttt 55133108  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 45511441 - 45511407
Alignment:
Q  56 ttcttgcacgggcttgtcggttaataatattttgc 90  Q
    ||||||||||||||||| |||||||||||||||||    
T  45511441 ttcttgcacgggcttgttggttaataatattttgc 45511407  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 42390832 - 42390795
Alignment:
Q  35 tccacccgagcttattagtgcttcttgcacgggcttgt 72  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  42390832 tccacccgagcttattagtacgtcttgcacgggcttgt 42390795  T

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Target: scaffold0209 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 12947 - 12895
Alignment:
Q  43 agcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 95  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  12947 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgttt 12895  T

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