View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2518_high_6 (Length: 315)

Name: NF2518_high_6
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2518_high_6
NF2518_high_6
[»] chr5 (7 HSPs)
chr5 (101-309)||(8730620-8730828)
chr5 (105-192)||(24072564-24072651)
chr5 (261-309)||(22675483-22675531)
chr5 (120-192)||(22675599-22675671)
chr5 (262-309)||(27712940-27712987)
chr5 (234-298)||(39024627-39024691)
chr5 (234-293)||(39184373-39184433)
[»] chr2 (10 HSPs)
chr2 (101-309)||(25505079-25505287)
chr2 (227-309)||(4471753-4471835)
chr2 (120-193)||(22885429-22885503)
chr2 (227-295)||(16959856-16959924)
chr2 (227-300)||(40704021-40704094)
chr2 (265-300)||(3745227-3745262)
chr2 (105-192)||(15710400-15710487)
chr2 (106-161)||(16959726-16959781)
chr2 (106-192)||(2062609-2062695)
chr2 (227-287)||(29486960-29487020)
[»] scaffold1613 (1 HSPs)
scaffold1613 (227-309)||(1186-1268)
[»] chr1 (6 HSPs)
chr1 (227-305)||(17033415-17033493)
chr1 (227-309)||(38544907-38544989)
chr1 (227-309)||(50589375-50589457)
chr1 (106-192)||(19598351-19598437)
chr1 (106-192)||(50589504-50589590)
chr1 (262-309)||(19598507-19598554)
[»] chr4 (5 HSPs)
chr4 (230-309)||(12296007-12296086)
chr4 (107-309)||(46698955-46699156)
chr4 (106-168)||(21988230-21988292)
chr4 (261-309)||(38929697-38929745)
chr4 (227-309)||(50102364-50102446)
[»] chr7 (6 HSPs)
chr7 (105-192)||(9106859-9106946)
chr7 (105-192)||(29647562-29647649)
chr7 (227-297)||(38485387-38485457)
chr7 (227-309)||(13311667-13311749)
chr7 (232-309)||(16954487-16954564)
chr7 (262-295)||(47457199-47457232)
[»] chr3 (5 HSPs)
chr3 (109-188)||(1653188-1653267)
chr3 (121-192)||(5556308-5556378)
chr3 (262-309)||(25594689-25594736)
chr3 (227-290)||(27398787-27398850)
chr3 (229-299)||(1653067-1653137)
[»] chr8 (4 HSPs)
chr8 (227-297)||(10552099-10552169)
chr8 (262-308)||(17720875-17720921)
chr8 (109-191)||(30236396-30236478)
chr8 (227-287)||(35062287-35062347)
[»] scaffold0062 (2 HSPs)
scaffold0062 (105-186)||(46785-46866)
scaffold0062 (105-192)||(59312-59399)
[»] chr6 (3 HSPs)
chr6 (109-192)||(12793815-12793898)
chr6 (234-295)||(9223878-9223939)
chr6 (227-292)||(12793944-12794009)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 101 - 309
Target Start/End: Original strand, 8730620 - 8730828
Alignment:
Q  101 gatgtcttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtgagtgtcct 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8730620 gatgtcttttggaggttgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagttttgagttgttaaggtgtttagggtgagtgtcct 8730719  T
Q  201 ttgagctgagcnnnnnnnnnnnnnnnattgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattac 300  Q
    | |||||||||               ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  8730720 tagagctgagctttttttcctttttgattgatgtttgccccaccgtaaatctggttgtctgtcttacttattgtgtgctggattctggtgggccgattac 8730819  T
Q  301 ctttgcttc 309  Q
     ||||||||    
T  8730820 ttttgcttc 8730828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 24072651 - 24072564
Alignment:
Q  105 tcttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    |||||| |||| || ||||||| ||||||||||| ||||||| ||||| ||||||||| ||||| | |||||||||||||||||||||    
T  24072651 tcttttagaggccgcctctgttattcgggtccatattcgttgtcgctagctcttgtttaagttttgggttgttaaggtgtttagggtg 24072564  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 22675531 - 22675483
Alignment:
Q  261 atcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    ||||||||| ||||||| ||||||||||||||||| |||| ||||||||    
T  22675531 atcttactttttgtgtgttggattctggtgggccggttacttttgcttc 22675483  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 22675671 - 22675599
Alignment:
Q  120 ctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    ||||||| ||||||||| | ||||||| ||||||||||| ||||||||| | || |  |||||||||||||||    
T  22675671 ctctgttattcgggtccttattcgttgtcgctacctcttctttgagttttgggtggccaaggtgtttagggtg 22675599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 27712940 - 27712987
Alignment:
Q  262 tcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    |||||||| ||||||||||||||||| ||||||| |||| ||||||||    
T  27712940 tcttactttttgtgtgctggattctgatgggccggttacttttgcttc 27712987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 39024691 - 39024627
Alignment:
Q  234 tttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgatt 298  Q
    ||||| ||||||||||||| || | || |||||||| ||||||| ||||| |||||||| |||||    
T  39024691 tttgcaccaccgcaaatcttgtcgattgtcttactttttgtgtgttggatactggtggggcgatt 39024627  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 39184433 - 39184373
Alignment:
Q  234 tttgccccaccgcaaatc-tggttgtttatcttacttattgtgtgctggattctggtgggc 293  Q
    ||||| |||||||||| | |||| || | ||||| ||||||||||||||||||||||||||    
T  39184433 tttgcaccaccgcaaagcatggtcgtctgtcttatttattgtgtgctggattctggtgggc 39184373  T

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Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 101 - 309
Target Start/End: Complemental strand, 25505287 - 25505079
Alignment:
Q  101 gatgtcttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtgagtgtcct 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25505287 gatgtcttttggaggttgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagttttgagttgttaaggtgtttagggtgagtgtcct 25505188  T
Q  201 ttgagctgagcnnnnnnnnnnnnnnnattgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattac 300  Q
    | |||||||||               ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  25505187 tagagctgagctttttttcctttttgattgatgtttgccccaccgtaaatctggttgtctgtcttacttattgtgtgctggattctggtgggccgattac 25505088  T
Q  301 ctttgcttc 309  Q
     ||||||||    
T  25505087 ttttgcttc 25505079  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 4471753 - 4471835
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    |||||||||||| ||||||||||| | || ||   |||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  4471753 attgatgtttgcaccaccgcaaattttgtcgtcagtcttacttattgtgtgatggattctggtgggccggttacttttgcttc 4471835  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 22885503 - 22885429
Alignment:
Q  120 ctctgtttttcgggtccatttt-cgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtga 193  Q
    ||||||| |||||||||||||| ||| | ||||||||||||||||||||||| |||| ||||||||||| |||||    
T  22885503 ctctgttattcgggtccatttttcgtcgtcgctacctcttgtttgagtttcgggttgctaaggtgtttaaggtga 22885429  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 16959856 - 16959924
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccg 295  Q
    |||||| ||||| ||||||||||||  ||||| | |||||| |||||||||||||||||||||||||||    
T  16959856 attgatatttgcaccaccgcaaatcatgttgtatgtcttacatattgtgtgctggattctggtgggccg 16959924  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 40704021 - 40704094
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattac 300  Q
    ||||| |||||| ||||||||||||  || |||| || ||| ||||||||||||||||||||||||||| ||||    
T  40704021 attgaggtttgcaccaccgcaaatcatgtcgtttgtcatacatattgtgtgctggattctggtgggccggttac 40704094  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 3745227 - 3745262
Alignment:
Q  265 tacttattgtgtgctggattctggtgggccgattac 300  Q
    ||||||||||||||||||||||||||||||| ||||    
T  3745227 tacttattgtgtgctggattctggtgggccggttac 3745262  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 15710400 - 15710487
Alignment:
Q  105 tcttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    |||||||||||||| ||| ||| ||||||| ||| | ||| | ||||| ||||||||||||| | |  |||||||||||||| |||||    
T  15710400 tcttttggaggtcgcctccgttattcgggttcatatccgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtg 15710487  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 16959726 - 16959781
Alignment:
Q  106 cttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtt 161  Q
    |||||||||| || ||||||| ||||||||||| ||| ||| ||||||||||||||    
T  16959726 cttttggaggccgcctctgttattcgggtccatattccttgtcgctacctcttgtt 16959781  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 2062609 - 2062695
Alignment:
Q  106 cttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    ||||||||||| | ||||||  ||||||||||| ||| |||  ||||||||| |||||||||| | |||| | ||||||||| ||||    
T  2062609 cttttggaggttgcctctgtgattcgggtccatattcattgttgctacctctcgtttgagttttgggttgcttaggtgtttatggtg 2062695  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 29486960 - 29487020
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctg 287  Q
    |||||||||||| ||||||||| ||  ||||| | | |||||| |||||||||||||||||    
T  29486960 attgatgtttgcaccaccgcaattcatgttgtctgttttacttgttgtgtgctggattctg 29487020  T

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Target: scaffold1613 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 1268 - 1186
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    |||||||||||| ||||||||||||  || |||| |||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  1268 attgatgtttgcaccaccgcaaatcatgtcgtttgtcttacatattgtgtgctggattctagtgggccgattacttttgcttc 1186  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 17033415 - 17033493
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttg 305  Q
    |||||||||||| ||||| ||||||| || |||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  17033415 attgatgtttgcaccaccacaaatcttgtcgtttgtcttacttattgtgtgctggattctggtgggccggttacttttg 17033493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 38544989 - 38544907
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    |||||||||||| ||||||||||||  || |||| |||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  38544989 attgatgtttgcaccaccgcaaatcatgtcgtttgtcttacatattgtgtgctggattctagtgggccgattacttttgcttc 38544907  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 50589457 - 50589375
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    |||||||||||| ||||||||||||  ||||| | |||||| ||||||||||||||||||||||||||| |||  ||||||||    
T  50589457 attgatgtttgcaccaccgcaaatcatgttgtatgtcttacatattgtgtgctggattctggtgggccggttaattttgcttc 50589375  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 19598351 - 19598437
Alignment:
Q  106 cttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    |||||||||  || ||||||| ||| ||||||| ||||||| |||||| ||| |||||||||| | || | ||||||||||||||||    
T  19598351 cttttggagaccgcctctgttattcaggtccatattcgttgtcgctacatctagtttgagttttgggtggctaaggtgtttagggtg 19598437  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 50589590 - 50589504
Alignment:
Q  106 cttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    |||||||||| || ||||||| ||||||||||| ||| ||| |||| ||||||| |||||||| | ||||| || ||||||| ||||    
T  50589590 cttttggaggccgcctctgttattcgggtccatattccttgtcgctgcctcttgcttgagttttgggttgtgaatgtgtttatggtg 50589504  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 19598507 - 19598554
Alignment:
Q  262 tcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    |||||||| |||||||||||| |||||||||||| |||| ||||||||    
T  19598507 tcttactttttgtgtgctggactctggtgggccggttacttttgcttc 19598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 12296007 - 12296086
Alignment:
Q  230 gatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    ||||||||| ||||||||||| | || || | |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  12296007 gatgtttgcaccaccgcaaatttagtcgtctgtcttacatattgtgtgctggattctggtgggccgattacttttgcttc 12296086  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 309
Target Start/End: Complemental strand, 46699156 - 46698955
Alignment:
Q  107 ttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtgagtgtcctttgagc 206  Q
    ||||||||| |  ||||||| ||| ||||||| || |||| ||||| |||||||||||||||    ||| |||||||||| ||||| |||||||| ||||    
T  46699156 ttttggaggccacctctgttattcaggtccatatttgttgtcgctatctcttgtttgagtttttgattgctaaggtgtttggggtgtgtgtccttcgagc 46699057  T
Q  207 tgagcnnnnnnnnnnnnnnnattgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgc 306  Q
    |||||               |||||||||||| |||| |||||| | ||  | | |||||| |||||||||||||||||| ||||||||||||| |||||    
T  46699056 tgagcattttttactttttgattgatgtttgcaccactgcaaattttgtattctgtcttacatattgtgtgctggattct-gtgggccgattacttttgc 46698958  T
Q  307 ttc 309  Q
    |||    
T  46698957 ttc 46698955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 21988292 - 21988230
Alignment:
Q  106 cttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagttt 168  Q
    ||||||||| |||||| |||| ||| ||||||| ||||||| |||||||||||||||||||||    
T  21988292 cttttggagatcgtctatgttattcaggtccatattcgttgtcgctacctcttgtttgagttt 21988230  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 38929697 - 38929745
Alignment:
Q  261 atcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||||    
T  38929697 atcttactttttgtgtgctggattctggtgggccggttacttttgcttc 38929745  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 50102364 - 50102446
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    |||||||||||| |||||| |||| | || || | |||||| |||||||||||||||||||||   |||||||| ||||||||    
T  50102364 attgatgtttgcaccaccgtaaattttgtcgtctgtcttacatattgtgtgctggattctggtcaaccgattacttttgcttc 50102446  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 9106859 - 9106946
Alignment:
Q  105 tcttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    |||||| |||| || ||||||| ||| ||||||||||||| | ||||| |||||||||||||||   | |||||||||||||||||||    
T  9106859 tcttttagaggccgcctctgttattcaggtccattttcgtcgtcgctagctcttgtttgagttttagggtgttaaggtgtttagggtg 9106946  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 29647562 - 29647649
Alignment:
Q  105 tcttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    ||||||||||| || ||||||| |||  || ||| ||||||| ||||| || | |||||||||| |||||||||||||||||| ||||    
T  29647562 tcttttggaggccgcctctgttattcacgttcatattcgttgtcgctaactttggtttgagttttgagttgttaaggtgtttaaggtg 29647649  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 38485387 - 38485457
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgat 297  Q
    |||||||||||| ||||||||| ||  || || | ||||||||||||||||||||||| || |||||||||    
T  38485387 attgatgtttgctccaccgcaagtcacgtcgtctgtcttacttattgtgtgctggattttgatgggccgat 38485457  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 13311667 - 13311749
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    |||||||||||| |||||||  ||| | | || | |||||| | |||||||||||||||||||||||||| ||| ||| ||||    
T  13311667 attgatgtttgcaccaccgcttatcagttcgtctgtcttacattttgtgtgctggattctggtgggccgagtacttttccttc 13311749  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 16954487 - 16954564
Alignment:
Q  232 tgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    ||||||| |||| ||| |||| || |||| || |||||| |||||||||| ||| | |||||||||||| ||||||||    
T  16954487 tgtttgcaccactgcatatcttgtcgtttgtcatacttactgtgtgctggtttccgatgggccgattacttttgcttc 16954564  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 47457232 - 47457199
Alignment:
Q  262 tcttacttattgtgtgctggattctggtgggccg 295  Q
    |||||||| |||||||||||||||||||||||||    
T  47457232 tcttactttttgtgtgctggattctggtgggccg 47457199  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 1653267 - 1653188
Alignment:
Q  109 ttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttag 188  Q
    |||||||| | ||||||| |||||||||||  |||||| ||||| |||||||||||||||   ||||||| |||||||||    
T  1653267 ttggaggttgcctctgttattcgggtccatactcgttgtcgctagctcttgtttgagttttaggttgttatggtgtttag 1653188  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 5556308 - 5556378
Alignment:
Q  121 tctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    ||||||||||||||||||||| |||| ||||| || | |||| ||||| | | |||||||||||||||||||    
T  5556308 tctgtttttcgggtccatttttgttgtcgctagctatcgtttaagttt-gggatgttaaggtgtttagggtg 5556378  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 25594736 - 25594689
Alignment:
Q  262 tcttacttattgtgtgctggattctggtgggccgattacctttgcttc 309  Q
    ||||||||||||| |||||||||||| |||||||||||| ||| ||||    
T  25594736 tcttacttattgtatgctggattctgatgggccgattactttttcttc 25594689  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 27398787 - 27398850
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtg 290  Q
    |||||||||||| |||| ||| |||  |||| || |||||| ||||||||||||||||||||||    
T  27398787 attgatgtttgcaccactgcatatcatgttgattgtcttacatattgtgtgctggattctggtg 27398850  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 1653137 - 1653067
Alignment:
Q  229 tgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgatta 299  Q
    |||||||||| | | ||||||||  | ||| | ||||||||||||||||||| |||||| |||||||||||    
T  1653137 tgatgtttgctctatcgcaaatcatgctgtctgtcttacttattgtgtgctgaattctgatgggccgatta 1653067  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 10552099 - 10552169
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccgat 297  Q
    |||||||||||| ||||||||| ||  || || | ||||||||||||||||||||||| || |||||||||    
T  10552099 attgatgtttgctccaccgcaagtcacgtcgtctgtcttacttattgtgtgctggattttgatgggccgat 10552169  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 17720921 - 17720875
Alignment:
Q  262 tcttacttattgtgtgctggattctggtgggccgattacctttgctt 308  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||    
T  17720921 tcttacattttgtgtgctggattctggtgggccgattacttttgctt 17720875  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 30236478 - 30236396
Alignment:
Q  109 ttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggt 191  Q
    ||||||| || ||||||||||||||| |||  |||||| ||||| ||||| ||||||||  | ||||| ||||||||||||||    
T  30236478 ttggaggccgcctctgtttttcgggttcatactcgttgtcgctagctcttatttgagttgtgggttgtcaaggtgtttagggt 30236396  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 35062287 - 35062347
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctg 287  Q
    |||||||||||| ||||||||| ||  || ||   ||||||||||||||||||||||||||    
T  35062287 attgatgtttgctccaccgcaagtcacgtcgtccgtcttacttattgtgtgctggattctg 35062347  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 46785 - 46866
Alignment:
Q  105 tcttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgttt 186  Q
    ||||||| ||| || ||||||| ||||||||||| | ||| | ||||| ||||||||||||||| |  ||||||||||||||    
T  46785 tcttttgaaggccgcctctgttattcgggtccatatccgtcgtcgctagctcttgtttgagttttggattgttaaggtgttt 46866  T

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Target: scaffold0062; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 59312 - 59399
Alignment:
Q  105 tcttttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    |||||||||||||| ||| ||| ||||||| ||| | ||| | ||||| ||||||||||||| | |  |||||||||||||| |||||    
T  59312 tcttttggaggtcgcctccgttattcgggttcatatccgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtg 59399  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 12793815 - 12793898
Alignment:
Q  109 ttggaggtcgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagtttcgagttgttaaggtgtttagggtg 192  Q
    |||||||||| || |||| |||||||||||  |||||| | ||| ||||||||| ||||  | ||||||||||||||| |||||    
T  12793815 ttggaggtcgcctttgttattcgggtccatactcgttgtccctagctcttgtttaagttgtgggttgttaaggtgttttgggtg 12793898  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 9223878 - 9223939
Alignment:
Q  234 tttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtgggccg 295  Q
    ||||| ||||||||||||  |||| || |||||||| ||||||| ||||| |||||||||||    
T  9223878 tttgctccaccgcaaatcatgttgattgtcttactttttgtgtgatggatgctggtgggccg 9223939  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 12793944 - 12794009
Alignment:
Q  227 attgatgtttgccccaccgcaaatctggttgtttatcttacttattgtgtgctggattctggtggg 292  Q
    |||||| ||||| ||||| ||||||  ||  ||| |||||||||||||||||||||||||| ||||    
T  12793944 attgatatttgctccacctcaaatcatgtcatttgtcttacttattgtgtgctggattctgatggg 12794009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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