View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2518_low_1 (Length: 655)

Name: NF2518_low_1
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2518_low_1
NF2518_low_1
[»] chr3 (7 HSPs)
chr3 (9-639)||(6759817-6760446)
chr3 (9-639)||(6456401-6457031)
chr3 (9-330)||(49963483-49963805)
chr3 (453-561)||(407026-407136)
chr3 (453-561)||(416806-416916)
chr3 (23-65)||(42104063-42104105)
chr3 (330-368)||(49963835-49963873)
[»] chr7 (2 HSPs)
chr7 (113-639)||(39676052-39676564)
chr7 (23-60)||(22027189-22027226)
[»] chr5 (1 HSPs)
chr5 (12-330)||(42631914-42632233)
[»] chr2 (5 HSPs)
chr2 (9-330)||(38175175-38175496)
chr2 (9-298)||(15229056-15229346)
chr2 (448-512)||(7197006-7197070)
chr2 (390-420)||(15046237-15046267)
chr2 (327-368)||(38175107-38175148)
[»] chr1 (5 HSPs)
chr1 (404-569)||(7276656-7276818)
chr1 (412-525)||(4204022-4204135)
chr1 (453-561)||(24346389-24346499)
chr1 (453-561)||(24358661-24358771)
chr1 (518-569)||(4203684-4203735)
[»] chr6 (1 HSPs)
chr6 (453-561)||(24183509-24183619)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 9 - 639
Target Start/End: Original strand, 6759817 - 6760446
Alignment:
Q  9 agcataggccaacagtgcttgcactcattccttaccacacttgctgttttagaaaataccatcaataccagaagctgaccataatcaatatcctgtnnnn 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||        
T  6759817 agcataggccagcagtgcttgcactcattccttaccacacttgctgttttagcagatcccatcaataccagaagctgaccataatcaatatcctgtaaaa 6759916  T
Q  109 nnnncgtatttagagcaaaacagaagcaggtttgataaaattctgaacaacaagacacactataaagctcacaaaacaaacagaagatnnnnnnngggcc 208  Q
        ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||       | |||    
T  6759917 aaaacgtatttcgagcaaaacagaagcatgtttgataaaattcagaacaacaagacacactaaaaagttcacaaaacaaacagaagataaaaaa-gcgcc 6760015  T
Q  209 gtaaaaatattgtacacaatttaacaggaaagagaacccacaacacaacagaagcagcaggcctaccaacaccataacataaccaacaaagcgccggcca 308  Q
    |||||||||  |||||||||||||||||||| | ||||||||||||||||| |||| || ||||||||||||||||||| |||||||||||| || ||||    
T  6760016 gtaaaaatacggtacacaatttaacaggaaacaaaacccacaacacaacagtagcaacatgcctaccaacaccataacagaaccaacaaagcaccagcca 6760115  T
Q  309 attgacaccaccacgcgttaccatttgtaatacatacaagccagttagagaatttccaatgatatgaatcatggacacattttcagcaaaggaagaaaca 408  Q
    |||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6760116 attgacaccaccacacgttgccatttgtaatacatacaagccagttggagaatatccaatgatatgaatcatggacacattttcagcaaaggaagaaaca 6760215  T
Q  409 tcctgcacaatactaacaacatcaaattcgcctttgttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatcc 508  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  6760216 tcctgcacaatactaacaacatcaaatttgcctttgttgaagcctctaaatcctaagccgcctttatttttacctcttcccaatctgtgctacctcatcc 6760315  T
Q  509 aataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaacagagg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6760316 aataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaacagagg 6760415  T
Q  609 aggtactctcaatacataaaagacctgtata 639  Q
    |||||||||||||||||||||||||||||||    
T  6760416 aggtactctcaatacataaaagacctgtata 6760446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 9 - 639
Target Start/End: Complemental strand, 6457031 - 6456401
Alignment:
Q  9 agcataggccaacagtgcttgcactcattccttaccacacttgctgttttagaaaataccatcaataccagaagctgaccataatcaatatcctgtnnnn 108  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| | || ||||||| |||||||| |||||||||||||||||||||        
T  6457031 agcataggccagcagtgcttgcacttattccttaccacacttgctgttttagcagatcccatcaacaccagaagttgaccataatcaatatcctgtaaaa 6456932  T
Q  109 nnnncgtatttagagcaaaacagaagcaggtttgataaaattctgaacaacaagacacactataaagctcacaaaacaaacagaagatnnnnnnngggcc 208  Q
        |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||       | |||    
T  6456931 aaaacgtatttagagcaaaacagaagcatgtttgataaaattcagaacaacaagacacactaaaaagttcacaaaacaaacagaagataaaaaa-gcgcc 6456833  T
Q  209 gtaaaaatattgtacacaatttaacaggaaagagaacccacaacacaacagaagcagcaggcctaccaacaccataacataaccaacaaagcgccggcca 308  Q
    |||||||||  | |||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  6456832 gtaaaaatacggcacacaatttaacaggaaacaaaacccacaacacaacagtagcagcatgcctaccaacaccataacagaaccaacaaagcaccagcca 6456733  T
Q  309 attgacaccaccacgcgttaccatttgtaatacatacaagccagttagagaatttccaatgatatgaatcatggacacattttcagcaaaggaagaaaca 408  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6456732 attgacaccaccacacgttaccatttgtaatacatacaagccagttggagaatatccaatgatatgaatcatggacacattttcagcaaaggaagaaaca 6456633  T
Q  409 tcctgcacaatactaacaacatcaaattcgcctttg-ttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatc 507  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  6456632 tcctgcacaatactaacaacatcaaatttgcctttgtttgaagcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtgctacctcatc 6456533  T
Q  508 caataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaacagag 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6456532 caataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaacagag 6456433  T
Q  608 gaggtactctcaatacataaaagacctgtata 639  Q
    ||||||||||||||||||||||||||||||||    
T  6456432 gaggtactctcaatacataaaagacctgtata 6456401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 49963483 - 49963805
Alignment:
Q  9 agcataggccaacagtgcttgcactcattccttaccacacttgctgttttagaaaataccatcaataccagaagctgaccataatcaatatcctgtnnnn 108  Q
    ||||||||||| ||||||||||||||||||||||||||||| | |||||||| | || |||||| |||||||||||||||||||||||||||||||        
T  49963483 agcataggccagcagtgcttgcactcattccttaccacactcgttgttttagcagatcccatcagtaccagaagctgaccataatcaatatcctgtaatg 49963582  T
Q  109 nnnn-cgtatttagagcaaaacagaagcaggtttgataaaattctgaacaacaagacacactataaagctcacaaaacaaacagaagatnnnnnnngggc 207  Q
         ||||||||||| ||||||||||||  ||||||||||||| |||||||||| ||||||| ||  || ||||||||||||||||||               
T  49963583 aaaaacgtatttagaggaaaacagaagcatatttgataaaattcagaacaacaaggcacactaaaattcttacaaaacaaacagaagataaaaaaaaatt 49963682  T
Q  208 cgtaaaaatattgtacacaatttaacaggaaagagaacccacaacacaacagaagcagcaggcctaccaacaccataacataaccaacaaagcgccggcc 307  Q
    ||||||||||   ||||||||||||||||||| |||||||||| |||||||| |||| || |||||||||||||||||||||||||||||| || |||||    
T  49963683 cgtaaaaatacgatacacaatttaacaggaaatagaacccacagcacaacagtagcaacatgcctaccaacaccataacataaccaacaaaacgtcggcc 49963782  T
Q  308 aattgacaccaccacgcgttacc 330  Q
    |||||||||||||| ||||||||    
T  49963783 aattgacaccaccatgcgttacc 49963805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 453 - 561
Target Start/End: Complemental strand, 407136 - 407026
Alignment:
Q  453 tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca 550  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| |||||||||||||||||||||  ||||||||||| |    
T  407136 tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata 407037  T
Q  551 ttttagtttga 561  Q
    ||| |||||||    
T  407036 tttcagtttga 407026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 453 - 561
Target Start/End: Original strand, 416806 - 416916
Alignment:
Q  453 tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca 550  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| |||||||||||||||||||||  ||||||||||| |    
T  416806 tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata 416905  T
Q  551 ttttagtttga 561  Q
    ||| |||||||    
T  416906 tttcagtttga 416916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 42104105 - 42104063
Alignment:
Q  23 gtgcttgcactcattccttaccacacttgctgttttagaaaat 65  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  42104105 gtgcttgcactcattccttaccacactttctgttttagcaaat 42104063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 49963835 - 49963873
Alignment:
Q  330 catttgtaatacatacaagccagttagagaatttccaat 368  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  49963835 catttgtaatacatacaagccagttggagaatatccaat 49963873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 113 - 639
Target Start/End: Complemental strand, 39676564 - 39676052
Alignment:
Q  113 cgtatttagagcaaaacagaagcaggtttgataaaattctgaacaacaagacacactataaagctcacaaaacaaacagaagatnnnnnnngggccgtaa 212  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||       | ||| ||     
T  39676564 cgtatttagagcaaaaccgaagcaagtttgataaaattcagaacaacaagacacactaaaaagctcacaaaacaaacataagataaaaaaagagccctag 39676465  T
Q  213 aaatattgtacacaatttaacaggaaagagaacccacaacacaacagaagcagcaggcctaccaacaccataacataaccaacaaagc-----gccggcc 307  Q
    |||||  ||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||     |||||||    
T  39676464 aaatacggtacacaatttaataggaaacagaacccacaacacaacagtagcagtaggcctaccaacaccataacagaaccaacaaagcaaagcgccggcc 39676365  T
Q  308 aattgacaccaccacgcgttaccatttgtaatacatacaagccagttagagaatttccaatgatatgaatcatggacacattttcagcaaaggaagaaac 407  Q
    | |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  39676364 agttgacaccaccacgcgttaccatttgcaatacatacaagccagttggagaatatccaatgatatgaatcatggatacattttcagcaaaggaagaaac 39676265  T
Q  408 atcctgcacaatactaacaacatcaaattcgcctttgttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatc 507  Q
    |||||||||||||||||||||||                   || |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  39676264 atcctgcacaatactaacaacat-------------------gcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtcctacctcatc 39676184  T
Q  508 caataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaacagag 607  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  39676183 caataatacatatatgtaattacaagacttcacagtaacaacattttagtttgaatcagcaaatttatcaactcttccacatgcacaagatgtaacagag 39676084  T
Q  608 gaggtactctcaatacataaaagacctgtata 639  Q
    ||||||||||||||||||||||||| ||||||    
T  39676083 gaggtactctcaatacataaaagacttgtata 39676052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 22027226 - 22027189
Alignment:
Q  23 gtgcttgcactcattccttaccacacttgctgttttag 60  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  22027226 gtgcttgcactcattccttaccacactttttgttttag 22027189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 42632233 - 42631914
Alignment:
Q  12 ataggccaacagtgcttgcactcattccttaccacacttgctgttttagaaaataccatcaataccagaagctgaccataatcaatatcctgtnnnnnnn 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||           
T  42632233 ataggccagcagtgcttgcactcattccttaccacacttgctgttttagcagatcccatcaataccagaagctgaccataatcaatatcctgtaataaaa 42632134  T
Q  112 n-cgtatttagagcaaaacagaagcaggtttgataaaattctgaacaacaagacacactataaagctcacaaaacaaacagaagatnnnnnnngggccgt 210  Q
      |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||       ||||| |    
T  42632133 tacgtacttagagcaaaatagaagcaggtttgataaaattcagaacaacaagacacactaaaaagctcacaaaacaaacagaagatacaaaaagggccat 42632034  T
Q  211 aaaaatattgtacacaatttaacaggaaagagaacccacaacacaacagaagcagcaggcctaccaacaccataacataaccaacaaagcgccggccaat 310  Q
    ||| |||  |||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||  | |||||||| | |||||||||    
T  42632033 aaagatacggtacacaatttagcaggaaacagaacccacaacacaaccgtagcagcaggcctaccaacaccataaccgacccaacaaaacaccggccaat 42631934  T
Q  311 tgacaccaccacgcgttacc 330  Q
    ||||||||||| ||||||||    
T  42631933 tgacaccaccatgcgttacc 42631914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 9 - 330
Target Start/End: Complemental strand, 38175496 - 38175175
Alignment:
Q  9 agcataggccaacagtgcttgcactcattccttaccacacttgctgttttagaaaataccatcaataccagaagctgaccataatcaatatcctgt-nnn 107  Q
    ||||||||||| ||||||||||||||||||||||||||||| | |||||||| | || |||||| |||||||||||||||||||||||||||||||        
T  38175496 agcataggccagcagtgcttgcactcattccttaccacactcgatgttttagcagatcccatcagtaccagaagctgaccataatcaatatcctgtaatg 38175397  T
Q  108 nnnnncgtatttagagcaaaacagaagcaggtttgataaaattctgaacaacaagacacactataaagctcacaaaacaaacagaagatnnnnnnngggc 207  Q
         ||||||||||| ||||||||||||  ||||||||||||| |||||||||| ||||||| ||| ||||||||||||||| |||||       |||     
T  38175396 aaaaacgtatttagaggaaaacagaagcatatttgataaaattcagaacaacaaggcacactaaaaaactcacaaaacaaaca-aagataaaaagagggt 38175298  T
Q  208 cgtaaaaatattgtacacaatttaacaggaaagagaacccacaacacaacagaagcagcaggcctaccaacaccataacataaccaacaaagcgccggcc 307  Q
    ||||||||||  |||||||||||||||| ||| ||||||  ||||||||||  | ||| |||||||||||||||||||||||||||||||| || ||| |    
T  38175297 cgtaaaaatacggtacacaatttaacagaaaatagaacctgcaacacaacaataacagtaggcctaccaacaccataacataaccaacaaaacgtcggtc 38175198  T
Q  308 aattgacaccaccacgcgttacc 330  Q
    ||||||||||||||| |||||||    
T  38175197 aattgacaccaccacacgttacc 38175175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 15229346 - 15229056
Alignment:
Q  9 agcataggccaacagtgcttgcactcattccttaccacacttgctgttttagaaaataccatcaataccagaagctgaccataatcaatatcctgtnnnn 108  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||  | || |||||| ||||| |||||||||||||||||||||||||        
T  15229346 agcataggcaagcattgcttgcactcattccttaccacacttgctgttttatcatatgccatcagtaccaaaagctgaccataatcaatatcctgtaata 15229247  T
Q  109 nnnn-cgtatttagagcaaaacagaagcaggtttgataaaattctgaacaacaagacacactataaagctcacaaaacaaacagaagatnnnnnnngggc 207  Q
         |||||| |||||||||||||||||  ||||||||||||| |||||||||| ||||||| |||||||| ||||||||| ||||||       |||     
T  15229246 aaaaacgtattaagagcaaaacagaagcatatttgataaaattcagaacaacaaggcacactaaaaagctcagaaaacaaactgaagataaaaaaagggt 15229147  T
Q  208 cgtaaaaatattgtacacaatttaacaggaaagagaacccacaacacaacagaagcagcaggcctaccaacaccataacataaccaacaaa 298  Q
    |||||||||   |||||||||||| | ||| | |||| |  ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  15229146 cgtaaaaattcggtacacaatttatctggacatagaatctgcaacacaacagtagcagcaggcctaccaacaccataacataaccagcaaa 15229056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 448 - 512
Target Start/End: Original strand, 7197006 - 7197070
Alignment:
Q  448 aagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaata 512  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||| | | |||||||||||    
T  7197006 aagcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtcccagctcatccaata 7197070  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 420
Target Start/End: Complemental strand, 15046267 - 15046237
Alignment:
Q  390 ttcagcaaaggaagaaacatcctgcacaata 420  Q
    |||||||||||||||||||||||||||||||    
T  15046267 ttcagcaaaggaagaaacatcctgcacaata 15046237  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 38175148 - 38175107
Alignment:
Q  327 taccatttgtaatacatacaagccagttagagaatttccaat 368  Q
    |||||||||||||||||||||| ||||| |||||| ||||||    
T  38175148 taccatttgtaatacatacaagtcagttggagaatatccaat 38175107  T

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Target: chr1 (Bit Score: 91; Significance: 9e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 404 - 569
Target Start/End: Original strand, 7276656 - 7276818
Alignment:
Q  404 aaacatcctgcacaatactaacaacatcaaattcgcctttgttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacct 503  Q
    ||||||| |||| |||||||||| ||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||| | || ||    
T  7276656 aaacatcttgcataatactaacagcatcaaattggcctttgttaaagcctctaattcctaagccgcctttgtttttacctcttccaaatctg-attagct 7276754  T
Q  504 catccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaa 569  Q
    |||||||||  | | ||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  7276755 catccaata--acacatatgtaattacaagccttcagagtaacaatattttagtttgaatcaacaa 7276818  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 412 - 525
Target Start/End: Complemental strand, 4204135 - 4204022
Alignment:
Q  412 tgcacaatactaacaacatcaaattcgcctttgttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaat 511  Q
    |||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| ||| ||||||||||    
T  4204135 tgcataatactaacaacatcaaattggcctttgttgaagcctctaaatcctaagctgcctttgtttttacctcttccaaatatgtcctagctcatccaat 4204036  T
Q  512 aatagatatatgta 525  Q
    || | |||||||||    
T  4204035 aacacatatatgta 4204022  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 453 - 561
Target Start/End: Original strand, 24346389 - 24346499
Alignment:
Q  453 tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca 550  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| |||||||||||||||||||||  ||||||||||| |    
T  24346389 tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata 24346488  T
Q  551 ttttagtttga 561  Q
    ||| |||||||    
T  24346489 tttcagtttga 24346499  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 453 - 561
Target Start/End: Original strand, 24358661 - 24358771
Alignment:
Q  453 tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca 550  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| |||||||||||||||||||||  ||||||||||| |    
T  24358661 tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata 24358760  T
Q  551 ttttagtttga 561  Q
    ||| |||||||    
T  24358761 tttcagtttga 24358771  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 569
Target Start/End: Complemental strand, 4203735 - 4203684
Alignment:
Q  518 tatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaa 569  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||||||||    
T  4203735 tatatgtaattacaagccttcagagtaacaatattttaatttgaatcaacaa 4203684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 453 - 561
Target Start/End: Complemental strand, 24183619 - 24183509
Alignment:
Q  453 tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca 550  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| |||||||||||||||||||||  ||||||||||| |    
T  24183619 tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata 24183520  T
Q  551 ttttagtttga 561  Q
    ||| |||||||    
T  24183519 tttcagtttga 24183509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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