View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2518_low_12 (Length: 227)
Name: NF2518_low_12
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2518_low_12 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37835901 - 37835675
Alignment:
| Q |
1 |
tccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatattggtcgggataggaccactaagaaggttactgtgcagatt |
100 |
Q |
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| T |
37835901 |
tccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatattggtcgggataggaccactaagaaggttactgtgcaggtt |
37835802 |
T |
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| Q |
101 |
tacttcttccaaggatggaattttaaacaaggaatctggaatttcaccgataagcagattggatgagagactcataaaccgtaaaagttgtaacttattc |
200 |
Q |
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| T |
37835801 |
tacttcttccaaggatggaattttaaacaaggaatctggaatttcaccgataagcagattggatgagagactcataaaccgtaaaagttgtaacttattc |
37835702 |
T |
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| Q |
201 |
aaactagatggtatctttccactgaat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37835701 |
aaactagatggtatctttccactgaat |
37835675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37849276 - 37849129
Alignment:
| Q |
1 |
tccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatattggtcgggataggaccactaagaaggttactgtgcagatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| |||||||||||||| | |
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| T |
37849276 |
tccctgacaactgattaccatatagatacaacctcaatagacgagtcaagtttccaatatttgttgggataggaccactaagtaggttactgtgcaggct |
37849177 |
T |
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| Q |
101 |
tacttcttccaaggatggaattttaaacaaggaatctggaatttcacc |
148 |
Q |
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| T |
37849176 |
aacttcttcaagggattgaatttgaaacaaagaatctggaatttcacc |
37849129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37841520 - 37841294
Alignment:
| Q |
1 |
tccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatattggtcgggataggaccactaagaaggttactgtgcagatt |
100 |
Q |
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||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||| || | |
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| T |
37841520 |
tccctgaaaacatattacgatgtagatacaacctcaatagatgagtcaagtttccaatatttgttgggatagggccactgagaaggttactgtgtaggct |
37841421 |
T |
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| Q |
101 |
tacttcttccaaggatggaattttaaacaaggaatctggaatttcaccgataagcagattggatgagagactcataaaccgtaaaagttgtaacttattc |
200 |
Q |
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|||||||| | ||| |||||| |||||| ||||||||||||||||| | ||||||||||| || || | |||| | |||| ||| ||||| ||| |
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| T |
37841420 |
cacttcttcgagggaatgaatttcaaacaatgaatctggaatttcaccagtcagcagattggaagacagtcctataacctttaaattttgcaactttttc |
37841321 |
T |
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| Q |
201 |
aaactagatggtatctttccactgaat |
227 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
37841320 |
aaactatatggtatctttccactgaat |
37841294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 37830197 - 37830054
Alignment:
| Q |
1 |
tccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatattggtcgggataggaccactaagaaggttactgtgcagatt |
100 |
Q |
| |
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||||||| ||| ||||| || |||||||||||| ||||||| ||||| ||||||||||||||| |||||| || |||||||||||| ||||||| | |
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| T |
37830197 |
tccctgaaaacatattactatgtagatacaaccttaatagattagtcatgtttccaatattggttgggatattgccgctaagaaggttattgtgcaggct |
37830098 |
T |
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| Q |
101 |
tacttcttccaaggatggaattttaaacaaggaatctggaattt |
144 |
Q |
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| T |
37830097 |
cacttcttcaagggattgaatttcaaataaagaatctggaattt |
37830054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 36864665 - 36864515
Alignment:
| Q |
1 |
tccctgacaactgattaccatatagatacaac---ctcaatagatgagtcaagtttccaatattggtcgggataggaccactaagaaggttactgtgcag |
97 |
Q |
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||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||||||| |
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| T |
36864665 |
tccctgaaaacatattaccatatagataatacagtctcaatagatgagtcaagtttccaatattggttggaatatttccactaagaaggttattgtgcag |
36864566 |
T |
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| Q |
98 |
atttacttcttccaaggatggaattttaaacaaggaatctggaatttcacc |
148 |
Q |
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| |||||||| | ||| ||||||| ||| || ||||||||||||||||| |
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| T |
36864565 |
gctcacttcttcaagggaaggaatttcaaataaagaatctggaatttcacc |
36864515 |
T |
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