View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2518_low_13 (Length: 210)
Name: NF2518_low_13
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2518_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 37835396 - 37835571
Alignment:
| Q |
20 |
gacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatcat |
119 |
Q |
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| T |
37835396 |
gacacactggacttttattcctccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatcat |
37835495 |
T |
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| Q |
120 |
cataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattgtgaaccttcatc |
195 |
Q |
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| T |
37835496 |
cataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattttgaaccttcatc |
37835571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 37829755 - 37829855
Alignment:
| Q |
80 |
tccatgctcatgggttggtgttcaatgtgactataatcatcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaa |
179 |
Q |
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| T |
37829755 |
tccatgctcatgggttggtgttcaatgtgaccata---cttataatgtcatttcccttagcctcactggtcatgggattattggtcaacttggaccagaa |
37829851 |
T |
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| Q |
180 |
attg |
183 |
Q |
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|||| |
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| T |
37829852 |
attg |
37829855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 37841022 - 37841178
Alignment:
| Q |
24 |
cactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatcatcata |
123 |
Q |
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| T |
37841022 |
cactggacctttgttcctcctctcatcaactctagttggaaagcttctgattcaattccatgctcatgggttggtgttcaatgtgaccat-acca--aca |
37841118 |
T |
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| Q |
124 |
atgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattg |
183 |
Q |
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| T |
37841119 |
atgtcatttccattaatctcactaaccatgggattcttggtcaacttggaccagaaattg |
37841178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 37848808 - 37848864
Alignment:
| Q |
54 |
tctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgac |
110 |
Q |
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| T |
37848808 |
tctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgac |
37848864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 12281402 - 12281514
Alignment:
| Q |
20 |
gacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatcat |
119 |
Q |
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| T |
12281402 |
gacacactggacttttattcctccttttatcaaatccacctggaatgcctctgattcaactccatgctcatgggttggtgtttaatgtgacta-----at |
12281496 |
T |
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| Q |
120 |
cataatgtcatttctctt |
137 |
Q |
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| T |
12281497 |
cataatgtcatttctctt |
12281514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 12281519 - 12281548
Alignment:
| Q |
165 |
caacttgggacagaaattgtgaaccttcat |
194 |
Q |
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| T |
12281519 |
caacttgggacagaaattgtgaaccttcat |
12281548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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