View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2518_low_2 (Length: 564)
Name: NF2518_low_2
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2518_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 65 - 551
Target Start/End: Complemental strand, 11399260 - 11398772
Alignment:
| Q |
65 |
caaattttgttcatagttatactttctcttgttctactatctgagatagtcacatgaatagaataacttcaatttcattataattttacttttttggttg |
164 |
Q |
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| T |
11399260 |
caaattttgttcatagttatactttctcttgttctagtatctgagatagtcacatgaatagaataacttcaatttcattataatttcacttttttggttg |
11399161 |
T |
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| Q |
165 |
attgttcttcatgatttcttcatgacttgttcttcatttctttctcagatcgtatgagtccgtgaatgaaggtgaagatctaaatgtggcggatgcagat |
264 |
Q |
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| T |
11399160 |
attgttcttcacgatttcttcatgacatgttctaaatttctttttcagatcggatgagtccgtgaatgaaggtgaagatctaaatgcggcggatgcggat |
11399061 |
T |
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| Q |
265 |
gtgacaaatccattgttgaatataggagattaatccattgataaatgtacttatttctaatctttatcatatcgaattgtttgctagtgataatgaattt |
364 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
11399060 |
gtgacaaatccattgttgaatataggagatgaatcaattgataaatgttcttatttctaatctttatcatatcgaattgtctactagtgataatgaattt |
11398961 |
T |
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| Q |
365 |
agaataattttatttggtgtaacttttaacactaatatgcatttttcattgatttctcaaggcatagatgccgttgatgtgaagaggcttattgatgcag |
464 |
Q |
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| T |
11398960 |
agaataattttatttggtgtaacttttaacactaatatgcatttttcagtgatttctcaaggcatagatgtcgttgatgtgaagaggcttattgatgcag |
11398861 |
T |
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| Q |
465 |
atatctcatcttgccaccggctattgctattgcatttaaagatggtgcaacattctaaacatctcaaatata--tataaacgataataa |
551 |
Q |
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| T |
11398860 |
atatctcatcttgccaacaactcttgctattgcattcaaagatggtgcaacattctaaacatctcaaatatatatataaacgataataa |
11398772 |
T |
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