View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2518_low_3 (Length: 509)
Name: NF2518_low_3
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2518_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Original strand, 11889089 - 11889572
Alignment:
| Q |
11 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcagatgaatacaatagaaagacaactgcaatagac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11889089 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcagatgaatacaatagaaagacaactgcaatagac |
11889188 |
T |
|
| Q |
111 |
tggtgttagatttgaatgcctggactaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaa-ttttttgtatcatct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11889189 |
tggtgttagatttgaatgcctggactaaagtatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatttttttgtatcatct |
11889288 |
T |
|
| Q |
210 |
atgtataggccattcagtagaaccatgttattgtcatatataaatactagaagnnnnnnnnttcagtagaccaccttggtagaaggtcgactgttggacc |
309 |
Q |
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| T |
11889289 |
atgcataggccattcagtagaaccatgttattgtcatatataaatactagaagaaaaaaaattcagtagaccaccttgatagaaggtcgactgttggacc |
11889388 |
T |
|
| Q |
310 |
gaaacctgaaaatttgttcaaaacaccaatgacatctgacgggactcatcatccccacgactgagtgggtgaccttatcggtgtcactttgacaaaaata |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11889389 |
gaaacctgaaaatttgttcaaaacaccaatgacatctgacgggactcatcatccccacgactgagtgggtgaccttatcggtgtcactttgacagaaata |
11889488 |
T |
|
| Q |
410 |
tgagttgagttttgagccacacatatctattttatcttgtctgttccaaattgacaccaataaggtcaccatctcagatgttac |
493 |
Q |
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| T |
11889489 |
taagttgagttttgagccacacatatctattttatcttgtttgttccaaattgacaccaataaggtcaccatctcagatgttac |
11889572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 271 - 493
Target Start/End: Original strand, 11895982 - 11896203
Alignment:
| Q |
271 |
ttcagtagaccaccttggtagaaggtcgactgttggaccgaaacctgaaaatttgttcaaaacaccaatgacatctgacgggactcatcatccccacgac |
370 |
Q |
| |
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||||||||| ||||||| ||||||||||||| | | ||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
11895982 |
ttcagtagaacaccttgatagaaggtcgactctag-accagaacctgaaaatttattcaaaacaccaatgacatttgacaggactcatcatccccacgac |
11896080 |
T |
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| Q |
371 |
tgagtgggtgaccttatcggtgtcactttgacaaaaatatgagttgagttttgagccacacatatctattttatcttgtctgttccaaattgacaccaat |
470 |
Q |
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||||||| ||||||||||||||| | || |||| ||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |
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| T |
11896081 |
tgagtggttgaccttatcggtgttagttagacagaaatacgagttgagttttgagccacacatatcaattatatcttgtttgttccaaattgtaaccaat |
11896180 |
T |
|
| Q |
471 |
aaggtcaccatctcagatgttac |
493 |
Q |
| |
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||||||| |||||||| ||||| |
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| T |
11896181 |
caggtcactatctcagacgttac |
11896203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 271 - 493
Target Start/End: Original strand, 11901648 - 11901869
Alignment:
| Q |
271 |
ttcagtagaccaccttggtagaaggtcgactgttggaccgaaacctgaaaatttgttcaaaacaccaatgacatctgacgggactcatcatccccacgac |
370 |
Q |
| |
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||||||||| ||||||| ||||||||||||| | | ||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
11901648 |
ttcagtagaacaccttgatagaaggtcgactctag-accagaacctgaaaatttattcaaaacaccaatgacatttgacaggactcatcatccccacgac |
11901746 |
T |
|
| Q |
371 |
tgagtgggtgaccttatcggtgtcactttgacaaaaatatgagttgagttttgagccacacatatctattttatcttgtctgttccaaattgacaccaat |
470 |
Q |
| |
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||||||| ||||||||||||||| | || |||| ||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |
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| T |
11901747 |
tgagtggttgaccttatcggtgttagttagacagaaatacgagttgagttttgagccacacatatcaattatatcttgtttgttccaaattgtaaccaat |
11901846 |
T |
|
| Q |
471 |
aaggtcaccatctcagatgttac |
493 |
Q |
| |
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||||||| |||||||| ||||| |
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| T |
11901847 |
caggtcactatctcagacgttac |
11901869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 11895576 - 11895800
Alignment:
| Q |
11 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcaga-tgaata-----caatagaaagacaactgca |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||| ||| | || |||||||||| ||||| |||||| |||||||||||||| |||| |
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| T |
11895576 |
gatgaaaaccttcacaaagagttaacaatgat-gtggattagcatagcaaattgatataattaatcaccgtgaatataatacaatagaaagacaattgca |
11895674 |
T |
|
| Q |
105 |
atagactggtgttagatttgaatgcctgga--------ctaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
196 |
Q |
| |
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||| ||||||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11895675 |
ataaactggtgttagattttaatgcctggagccctgaactaatgcatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
11895774 |
T |
|
| Q |
197 |
ttttgtatcatctatgtataggccattc |
224 |
Q |
| |
|
||| |||||||||||| |||||||||| |
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| T |
11895775 |
ttt--tatcatctatgtctaggccattc |
11895800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 11901242 - 11901466
Alignment:
| Q |
11 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcaga-tgaata-----caatagaaagacaactgca |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||| ||| | || |||||||||| ||||| |||||| |||||||||||||| |||| |
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| T |
11901242 |
gatgaaaaccttcacaaagagttaacaatgat-gtggattagcatagcaaattgatataattaatcaccgtgaatataatacaatagaaagacaattgca |
11901340 |
T |
|
| Q |
105 |
atagactggtgttagatttgaatgcctgga--------ctaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
196 |
Q |
| |
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||| ||||||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901341 |
ataaactggtgttagattttaatgcctggagccctgaactaatgcatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
11901440 |
T |
|
| Q |
197 |
ttttgtatcatctatgtataggccattc |
224 |
Q |
| |
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||| |||||||||||| |||||||||| |
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|
| T |
11901441 |
ttt--tatcatctatgtctaggccattc |
11901466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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