View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2518_low_4 (Length: 445)
Name: NF2518_low_4
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2518_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 165 - 429
Target Start/End: Complemental strand, 1538928 - 1538664
Alignment:
| Q |
165 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
264 |
Q |
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| T |
1538928 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
1538829 |
T |
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| Q |
265 |
tattatttggtataaagtttcatgttgtattgtttcccgatttgataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgct |
364 |
Q |
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| T |
1538828 |
tattatttggtataaagtttcatgttgtattgttttccgatttgataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgct |
1538729 |
T |
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| Q |
365 |
gctttaagtgaaactggacagtttccaccaaaactattgaaggaggtagtatgagaagaaattat |
429 |
Q |
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| T |
1538728 |
gctttaagtgaaactggacagtttccaccaaaactattgaaggaggtcgtatgagaagaaattat |
1538664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 165 - 429
Target Start/End: Complemental strand, 17768975 - 17768711
Alignment:
| Q |
165 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
264 |
Q |
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| T |
17768975 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
17768876 |
T |
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| Q |
265 |
tattatttggtataaagtttcatgttgtattgtttcccgatttgataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgct |
364 |
Q |
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| T |
17768875 |
tattatttggtataaagtttcatgttgtattgttttccgatttgataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgct |
17768776 |
T |
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| Q |
365 |
gctttaagtgaaactggacagtttccaccaaaactattgaaggaggtagtatgagaagaaattat |
429 |
Q |
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| T |
17768775 |
gctttaagtgaaactggacagtttccaccaaaactattgaaggaggtcgtatgagaagaaattat |
17768711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 25777343 - 25777280
Alignment:
| Q |
10 |
ataattcttgacctgaggaggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
73 |
Q |
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| T |
25777343 |
ataattcttgacctgaggaggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
25777280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 44178407 - 44178329
Alignment:
| Q |
316 |
ttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccacca |
394 |
Q |
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|||||||| ||||||||| | |||| ||||||||| | ||||||||||||||||||||| |||||||||||| |||||| |
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| T |
44178407 |
ttcgaaagctggagaggtcccggttagattaactcgcgcacgagctgctgctttaagtgcaactggacagttgccacca |
44178329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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