View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2518_low_7 (Length: 303)

Name: NF2518_low_7
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2518_low_7
NF2518_low_7
[»] chr5 (22 HSPs)
chr5 (23-303)||(8730796-8731076)
chr5 (27-303)||(39184112-39184389)
chr5 (23-303)||(24072190-24072468)
chr5 (53-296)||(7391990-7392226)
chr5 (35-303)||(17854001-17854271)
chr5 (23-303)||(27712955-27713227)
chr5 (45-293)||(13954179-13954425)
chr5 (23-171)||(22675247-22675394)
chr5 (38-301)||(31721559-31721820)
chr5 (52-283)||(14302382-14302612)
chr5 (54-292)||(8297358-8297595)
chr5 (45-167)||(21402782-21402903)
chr5 (55-217)||(39024397-39024565)
chr5 (52-292)||(7195192-7195429)
chr5 (96-297)||(26045960-26046160)
chr5 (244-301)||(22675456-22675513)
chr5 (52-171)||(33258834-33258952)
chr5 (70-171)||(25992018-25992118)
chr5 (243-301)||(25658296-25658354)
chr5 (70-171)||(34378109-34378210)
chr5 (124-224)||(23426302-23426402)
chr5 (54-137)||(25658105-25658189)
[»] chr2 (34 HSPs)
chr2 (23-303)||(25504831-25505111)
chr2 (28-301)||(22885061-22885332)
chr2 (23-301)||(4471805-4472080)
chr2 (23-303)||(27739855-27740133)
chr2 (34-299)||(15126344-15126601)
chr2 (45-290)||(29487024-29487267)
chr2 (27-171)||(33788559-33788702)
chr2 (27-157)||(3745359-3745489)
chr2 (40-303)||(2062787-2063030)
chr2 (28-114)||(43816384-43816470)
chr2 (54-171)||(16959993-16960109)
chr2 (52-293)||(37770594-37770833)
chr2 (38-171)||(31902352-31902484)
chr2 (50-152)||(16952332-16952434)
chr2 (50-152)||(17022997-17023099)
chr2 (50-152)||(17060303-17060405)
chr2 (202-303)||(3745239-3745340)
chr2 (69-278)||(18680969-18681177)
chr2 (54-283)||(10173531-10173761)
chr2 (52-152)||(34230231-34230330)
chr2 (52-198)||(1269467-1269612)
chr2 (23-157)||(27880054-27880185)
chr2 (210-299)||(15710590-15710679)
chr2 (69-152)||(17079199-17079282)
chr2 (205-300)||(14566329-14566424)
chr2 (52-157)||(915405-915508)
chr2 (122-171)||(39338886-39338935)
chr2 (241-293)||(7874181-7874233)
chr2 (38-113)||(12793669-12793743)
chr2 (52-138)||(7696007-7696091)
chr2 (249-303)||(15723049-15723103)
chr2 (52-113)||(41086749-41086810)
chr2 (260-301)||(34581605-34581646)
chr2 (247-291)||(4162167-4162211)
[»] chr3 (24 HSPs)
chr3 (37-303)||(5556449-5556715)
chr3 (37-303)||(30935326-30935592)
chr3 (52-301)||(823386-823635)
chr3 (37-190)||(1652823-1652975)
chr3 (57-303)||(27398837-27399083)
chr3 (27-171)||(47945717-47945860)
chr3 (52-196)||(14879421-14879565)
chr3 (45-171)||(33143893-33144019)
chr3 (58-291)||(25647575-25647809)
chr3 (96-286)||(37123278-37123467)
chr3 (96-198)||(14193924-14194027)
chr3 (69-141)||(38488836-38488908)
chr3 (241-293)||(40023711-40023763)
chr3 (54-291)||(14755218-14755453)
chr3 (52-279)||(23328300-23328527)
chr3 (45-167)||(39021222-39021342)
chr3 (240-293)||(4464074-4464127)
chr3 (251-303)||(25594669-25594721)
chr3 (45-113)||(46358331-46358399)
chr3 (231-303)||(47945591-47945663)
chr3 (122-171)||(9584074-9584123)
chr3 (122-171)||(17550968-17551017)
chr3 (122-171)||(19176513-19176562)
chr3 (122-171)||(43012386-43012435)
[»] chr4 (25 HSPs)
chr4 (23-303)||(12296054-12296333)
chr4 (28-303)||(46698712-46698986)
chr4 (45-294)||(53823366-53823614)
chr4 (45-293)||(19815165-19815416)
chr4 (55-200)||(35800471-35800615)
chr4 (34-303)||(38929713-38929974)
chr4 (41-292)||(19672991-19673240)
chr4 (27-303)||(28966753-28967021)
chr4 (41-278)||(39420954-39421190)
chr4 (54-301)||(21387158-21387402)
chr4 (54-293)||(22811114-22811351)
chr4 (72-301)||(16501614-16501842)
chr4 (34-143)||(21983755-21983863)
chr4 (228-303)||(21988046-21988121)
chr4 (70-279)||(25753075-25753283)
chr4 (54-171)||(2061692-2061808)
chr4 (69-170)||(24740071-24740172)
chr4 (230-303)||(50102414-50102487)
chr4 (37-129)||(43374031-43374122)
chr4 (100-171)||(6599945-6600015)
chr4 (231-302)||(6600076-6600147)
chr4 (263-301)||(36962650-36962688)
chr4 (241-293)||(2825673-2825725)
chr4 (241-293)||(31050801-31050853)
chr4 (34-153)||(41117901-41118019)
[»] chr7 (26 HSPs)
chr7 (24-303)||(11379052-11379329)
chr7 (34-303)||(13311717-13311986)
chr7 (34-303)||(47456956-47457217)
chr7 (53-283)||(36448982-36449212)
chr7 (52-293)||(8745042-8745282)
chr7 (38-237)||(46133214-46133414)
chr7 (34-157)||(22568045-22568168)
chr7 (52-297)||(3478237-3478481)
chr7 (52-296)||(34389848-34390093)
chr7 (23-171)||(48058577-48058724)
chr7 (52-198)||(24324749-24324895)
chr7 (38-237)||(38485501-38485698)
chr7 (37-190)||(12480878-12481031)
chr7 (45-293)||(6716682-6716928)
chr7 (23-303)||(9107042-9107319)
chr7 (57-279)||(1320697-1320919)
chr7 (96-291)||(16954544-16954739)
chr7 (24-182)||(9428030-9428186)
chr7 (95-237)||(23983141-23983281)
chr7 (57-291)||(42533210-42533442)
chr7 (240-293)||(35745965-35746018)
chr7 (250-302)||(1820153-1820205)
chr7 (96-198)||(16828931-16829033)
chr7 (122-171)||(5860309-5860358)
chr7 (55-191)||(26386130-26386265)
chr7 (265-293)||(33434998-33435026)
[»] scaffold1613 (1 HSPs)
scaffold1613 (27-303)||(943-1218)
[»] chr1 (23 HSPs)
chr1 (27-303)||(38544664-38544939)
chr1 (23-298)||(42374047-42374322)
chr1 (23-303)||(17033465-17033746)
chr1 (23-303)||(19598522-19598794)
chr1 (23-303)||(50589130-50589407)
chr1 (38-231)||(4651731-4651922)
chr1 (52-263)||(27102109-27102320)
chr1 (45-198)||(6583161-6583313)
chr1 (96-293)||(32864557-32864754)
chr1 (53-303)||(24658809-24659059)
chr1 (52-171)||(27905423-27905536)
chr1 (36-185)||(46603389-46603529)
chr1 (45-191)||(34774862-34775007)
chr1 (243-293)||(6583333-6583383)
chr1 (242-292)||(7857544-7857594)
chr1 (121-282)||(9313309-9313470)
chr1 (122-294)||(31585781-31585954)
chr1 (54-112)||(31290973-31291031)
chr1 (52-146)||(10785412-10785504)
chr1 (122-172)||(41920462-41920512)
chr1 (129-291)||(46814495-46814656)
chr1 (244-293)||(52278387-52278436)
chr1 (241-289)||(27032003-27032050)
[»] chr8 (17 HSPs)
chr8 (26-303)||(17720632-17720906)
chr8 (37-237)||(30236064-30236264)
chr8 (23-301)||(15906567-15906845)
chr8 (52-291)||(17656954-17657191)
chr8 (45-293)||(10248498-10248745)
chr8 (70-153)||(32945673-32945755)
chr8 (122-296)||(15821400-15821573)
chr8 (54-279)||(35062360-35062584)
chr8 (41-157)||(41791205-41791320)
chr8 (38-185)||(10552265-10552410)
chr8 (54-183)||(12198022-12198151)
chr8 (54-183)||(12442450-12442579)
chr8 (210-299)||(18690314-18690404)
chr8 (122-171)||(24995416-24995465)
chr8 (122-171)||(31207383-31207432)
chr8 (122-171)||(36630848-36630897)
chr8 (250-302)||(5221987-5222039)
[»] chr6 (14 HSPs)
chr6 (52-303)||(32935291-32935541)
chr6 (23-303)||(33968538-33968815)
chr6 (37-301)||(9223923-9224186)
chr6 (45-171)||(26215964-26216089)
chr6 (37-190)||(26534652-26534808)
chr6 (45-190)||(21266105-21266249)
chr6 (52-291)||(20701755-20701993)
chr6 (72-295)||(21264876-21265095)
chr6 (27-137)||(13098498-13098607)
chr6 (45-166)||(13423482-13423602)
chr6 (241-293)||(15132662-15132714)
chr6 (244-303)||(13098706-13098765)
chr6 (240-291)||(16510441-16510492)
chr6 (143-303)||(3880625-3880785)
[»] scaffold0050 (1 HSPs)
scaffold0050 (54-293)||(36596-36836)
[»] scaffold0200 (1 HSPs)
scaffold0200 (52-198)||(19367-19512)
[»] scaffold0119 (1 HSPs)
scaffold0119 (52-198)||(42090-42235)
[»] scaffold0062 (3 HSPs)
scaffold0062 (210-299)||(59502-59591)
scaffold0062 (117-303)||(46970-47158)
scaffold0062 (249-303)||(71606-71660)
[»] scaffold0063 (1 HSPs)
scaffold0063 (52-289)||(58020-58256)
[»] scaffold0499 (1 HSPs)
scaffold0499 (23-216)||(6525-6716)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 8731076 - 8730796
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  8731076 aagttgagccgctattctaaatatcaattagcttccaccacctctgaaccttcggtccatcgaaagaacaccaaaaaagcccaaaaccaaaacctgaacc 8730977  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  8730976 aaagaactgactcccgatctcgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggcaccccttatcctcagtccaccataggaaca 8730877  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8730876 ccgtagccagcaaaatcagatagtagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 8730796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 303
Target Start/End: Original strand, 39184112 - 39184389
Alignment:
Q  27 tgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaa-acctgaaccaaa 125  Q
    |||||| |||||| ||| |||||| ||||||||| |||||  |||||| ||||||||||||||| ||||||||||| ||||||||||  | |||||||||    
T  39184112 tgagccactattcaaaagatcaatcagcttccactacctcacaacctctggtccaccgaaagaacaccaaaaaagctcaaaaccaaatgcttgaaccaaa 39184211  T
Q  126 gaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccg 225  Q
    ||||||||| |||||| ||||| ||||| ||| || |||||||||  || || ||||||| ||||| |||||  | | || || |||||||| ||||| |    
T  39184212 gaactgacttccgatctcgaatcaaaagtgatcggcccaccagaccacatgatcaaatcagaagggcaccccaaaccgtcggttcaccagagaaacactg 39184311  T
Q  226 tagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    | |||| |||||  |||||||| |||||| |||||| | ||||||||| ||||||||| | |||||||||||||||||    
T  39184312 tcgccaaccaaacaagattgcaactagacgccaactcccgatctcgaatcaaaagtaacctgcccaccagaatccagc 39184389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 24072190 - 24072468
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||| | |||||||||| | || | ||| || ||||||| | |||||||||||||||||||||| ||||||||| ||| ||| |||  | ||||||    
T  24072190 aagttgagtcactattctaaagaccattcagcatcaaccacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaaatcaa--cttgaacc 24072287  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    |||||||||||| |||||| | ||| |||||||||  | | ||||||||  | |||||||||| ||||| |||||  | |||| ||||||||||| ||||    
T  24072288 aaagaactgacttccgatctcaaatcaaaagcgatcagccaaccagactttaggaccaaatcagaagggcaccccaaaccctcggtccaccagagaaaca 24072387  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    | ||||| | |||||  ||||| |||||| || |||||| | ||||| ||||||||||||| |||||||| ||||||||||    
T  24072388 ctgtagctatccaaacaagattacagctaaacgccaactcccgatcttgaagcaaaagtaaccggcccactagaatccagc 24072468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 53 - 296
Target Start/End: Original strand, 7391990 - 7392226
Alignment:
Q  53 gcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    ||||| |||||||||  ||||||| ||||||||||||| |||| ||||||||||||||||    ||  ||||||||||||||||||||| ||||| ||||    
T  7391990 gcttcaaccacctctcgacctccgatccaccgaaagaa-accataaaagcccaaaaccaa----tg--ccaaagaactgactcccgatctcgaatcaaaa 7392082  T
Q  153 gcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctag 252  Q
    | ||| |||||||||||||  | |||||||||| ||||| |||||| | |||| || || ||||| ||||||  | | |||||||  |||||||||||||    
T  7392083 gtgatcggtccaccagactttaggaccaaatcagaagggcacccctcaccctcggtacatcagagaaacaccaaatcaagccaaacaagattgcagctag 7392182  T
Q  253 acaccaacttctgatctcgaagcaaaagtaatcggcccaccaga 296  Q
    ||||||||| | ||||||||||||||||||| ||| ||| ||||    
T  7392183 acaccaactcccgatctcgaagcaaaagtaaccggtccatcaga 7392226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 303
Target Start/End: Original strand, 17854001 - 17854271
Alignment:
Q  35 tattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaa-aagcccaaaaccaaaacctgaaccaaagaactgac 133  Q
    ||||||||| |||| | | |||||||||||||| ||| || ||||||||||||||| |  |||| |||||||||   | ||| ||||||||| || ||||    
T  17854001 tattctaaagatcattcaacttccaccacctctcaacttcaggtccaccgaaagaacattaaaataagcccaaagt-agaacttgaaccaaataattgac 17854099  T
Q  134 tcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagc 233  Q
    |||||||| ||| | ||||||| | || |||||| ||| ||||||||||| | ||||| |||||| | || | |||||||||||||||||| ||||||||    
T  17854100 tcccgatctcgagtcaaaagcggtcggcccaccatacttcaagaccaaattagaagggcacccctcacccccggtccaccagaggaacaccctagccagc 17854199  T
Q  234 caaatc-agattgcagctagacaccaacttctgatctcgaagc-aaaagtaatcggcccaccagaatccagc 303  Q
    |||| | |||||| ||||||| ||||||| | |||||| |||| ||||||||  ||||||||||||||||||    
T  17854200 caaaacaagattgtagctagagaccaactcccgatctcaaagcaaaaagtaaatggcccaccagaatccagc 17854271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 27713227 - 27712955
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| |||||||||| |||||| || |||||||||||   ||||||  | |||||||||||| | || |||||||||||||| |||| ||| ||    
T  27713227 aagttgagccactattctaaagatcaataagtttccaccacctgacaacctctagaccaccgaaagaacaacataaaagcccaaaacc-aaacttgagcc 27713129  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    |||||||||| |||||||| ||||| |||| |||| || |||| ||||| || |||| || || | ||| | ||||||||| ||||||||||||| |       
T  27713128 aaagaactgattcccgatctcgaatcaaaaacgatcggcccactagacttcaggacccaaccagacgggcaacccttatccccagtccaccagagaa--- 27713032  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
         |||| |||||  ||| |||| |||||| |||||| | || |||||||||||||||| ||||||| |||||||||||    
T  27713031 ----tgccaaccaaacaagaatgcatctagacgccaactcccgacctcgaagcaaaagtaaccggcccatcagaatccagc 27712955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 293
Target Start/End: Original strand, 13954179 - 13954425
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcac 143  Q
    |||||| || ||||||||||| | ||| |||| ||||||||||||| |||| ||||||||||||||| |||| ||| |||||| | |||||||||||| |    
T  13954179 atcaatcagtttccaccacctttcaacttccgatccaccgaaagaa-accataaaaagcccaaaacc-aaacttgagccaaagtaatgactcccgatctc 13954276  T
Q  144 gaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagat 243  Q
    |||| ||||| ||| || ||||||||||  | |||||||||| || || |||||| | | || || |||||||| |||||   | | || ||||| ||||    
T  13954277 gaatcaaaagtgatcggcccaccagactttaggaccaaatcagaa-ggcacccctcaccttcggtacaccagagaaacacaaaatcaagtcaaataagat 13954375  T
Q  244 tgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||||||| |||  |||||||||||||||||||| |||||||||    
T  13954376 tgcagctagacaccgactcttgatctcgaagcaaaagtaaccggcccacc 13954425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 22675247 - 22675394
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| ||| |||||| |||||| | |||||||||||||  ||||||||| |||| ||||||| ||||  ||||||||||||| |||| ||| ||    
T  22675247 aagttgagccactagtctaaagatcaatcaacttccaccacctcacaacctccggaccactgaaagaacaccattaaagcccaaaacc-aaacttgagcc 22675345  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    ||||||||||||||||||| ||||| |||| |||| |||||||||||||    
T  22675346 aaagaactgactcccgatctcgaatcaaaatcgatcggtccaccagact 22675394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 301
Target Start/End: Complemental strand, 31721820 - 31721559
Alignment:
Q  38 tctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactccc 137  Q
    |||||| |||||| | ||||||||||| |  ||| |||||||||| ||| ||| ||||||| | |||||||||||||  ||||||| |||||||||||||    
T  31721820 tctaaagatcaatcaacttccaccaccgcgcaacatccggtccactgaaggaacaccaaaacaacccaaaaccaaaaa-tgaaccagagaactgactccc 31721722  T
Q  138 gatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaa 237  Q
    |||| ||||| ||||||||| || |||  ||||| ||  |||| |||| ||||| |||||||| || | ||||||||||| |||| |||||||| |||||    
T  31721721 gatctcgaatcaaaagcgatcggcccattagacttcagaaccacatcagaagggcaccccttacccccggtccaccagagaaacatcgtagccaaccaaa 31721622  T
Q  238 tcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
      | | ||| ||||||  |||||| | |||| |||||||||| | | ||||||| |||||||||    
T  31721621 caataatgccgctagaagccaactcccgatcgcgaagcaaaa-tgaccggcccatcagaatcca 31721559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 52 - 283
Target Start/End: Original strand, 14302382 - 14302612
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||||||||||||  ||||||| ||||||||||||| |||| ||||||||||||||| |||| ||  ||||||||||||||||| ||| ||||  ||    
T  14302382 agcttccaccacctctcgacctccgatccaccgaaagaa-accataaaaagcccaaaacc-aaacttgctccaaagaactgactcccaatctcgaaccaa 14302479  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagct 250  Q
    ||| |||  ||||||||||||  | ||||||| || ||||| | |||| | ||||  | |||||||| ||||||  | |  ||||||  || ||||||||    
T  14302480 aagtgatcagtccaccagactttaggaccaaaacagaagggcatccctcaccctcgatacaccagagaaacaccagatcacgccaaactagcttgcagct 14302579  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaa 283  Q
    ||||||  ||| | |||||||||||||||||||    
T  14302580 agacacggactcccgatctcgaagcaaaagtaa 14302612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 292
Target Start/End: Complemental strand, 8297595 - 8297358
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    |||||||||||||   ||||||| | ||||||||||| |||| |||||| ||||||||||| | ||| ||||||||||||||||||||| ||||| ||||    
T  8297595 cttccaccacctcacgacctccgattcaccgaaagaa-accataaaaagtccaaaaccaaa-cttgagccaaagaactgactcccgatctcgaatcaaaa 8297498  T
Q  153 gcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctag 252  Q
       ||  | ||||||  ||  |  ||||||||| ||||| |||||| | |||| || ||| |||| ||||||  | | ||| |||  | |||||||||||    
T  8297497 attattagcccaccatgctttagaaccaaatcagaagggcacccctcaccctcggtacactagagaaacaccaaatcaagcaaaacaaaattgcagctag 8297398  T
Q  253 acaccaacttctgatctcgaagcaaaagtaatcggcccac 292  Q
    |||||||||   ||||||||||||||||||||||||||||    
T  8297397 acaccaactctcgatctcgaagcaaaagtaatcggcccac 8297358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 21402782 - 21402903
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcac 143  Q
    |||||| | |||||||||||||| |||||||  ||||||||||||| |||| ||||||| ||||||| ||||||||  |||||||||||||||||||| |    
T  21402782 atcaatcaacttccaccacctctcaacctccaatccaccgaaagaa-accataaaaagctcaaaacc-aaacctgagtcaaagaactgactcccgatctc 21402879  T
Q  144 gaattaaaagcgataggtccacca 167  Q
    ||| |||||| ||| || ||||||    
T  21402880 gaactaaaagtgatcggcccacca 21402903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 39024397 - 39024565
Alignment:
Q  55 ttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaacc-aaaacc-----tgaaccaaagaactgactcccgatcacgaat 147  Q
    ||||||||||||| ||| |||  ||||||||||||| |||| ||||| ||||||||| ||||||     |||||||||||| |||||||||||| |||||    
T  39024397 ttccaccacctctcaacttccaatccaccgaaagaacaccataaaaaacccaaaacccaaaaccaaacttgaaccaaagaagtgactcccgatctcgaat 39024496  T
Q  148 taaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagag 217  Q
     ||||||||| |  |||||| ||| || |||||| ||| ||||| | |||| | ||||||||||||||||    
T  39024497 caaaagcgattgagccaccaaacttcaggaccaactcagaagggca-ccctcaccctcagtccaccagag 39024565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 292
Target Start/End: Original strand, 7195192 - 7195429
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaa 151  Q
    ||||||||| ||||||  ||||||| |||||||||| || |||| |||||||||||  | || | ||| ||||||||||||||||||||| ||||| |||    
T  7195192 agcttccacgacctctcgacctccgatccaccgaaaaaa-accataaaagcccaaactctaa-cttgagccaaagaactgactcccgatctcgaatcaaa 7195289  T
Q  152 agcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagcta 251  Q
    || ||| ||  |||||||||  | | |||||||| ||||| |||||| | |||  || |||||||| |||||   | |  ||||||  | ||||||||||    
T  7195290 agtgatcggctcaccagactttatggccaaatcagaagggcacccctcaccct-ggtacaccagagaaacactaaatcacgccaaacaatattgcagcta 7195388  T
Q  252 gacaccaacttctgatctcgaagcaaaagtaatcggcccac 292  Q
    | |||| ||| | |||||||||||||||||||  |||||||    
T  7195389 gccaccgactcccgatctcgaagcaaaagtaactggcccac 7195429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 297
Target Start/End: Original strand, 26045960 - 26046160
Alignment:
Q  96 aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaa-tcataagggaac 194  Q
    |||||| ||||||||||| | ||| |||||  ||| |||||||||| ||||| ||||| ||| ||| |||||||||  | ||||||| ||| || || ||    
T  26045960 aaaaagtccaaaaccaaa-cttgagccaaaacactaactcccgatctcgaatcaaaagtgatcggttcaccagactttaggaccaaactcaaaaaggcac 26046058  T
Q  195 cccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacca 294  Q
    |||||| || | || |||||||| ||||||  | |  ||||||| ||||||||||||| |||| ||| | | ||||||||||||| ||||| ||||||||    
T  26046059 cccttaacc-cggtacaccagagaaacaccaaatcacgccaaataagattgcagctagccaccgactcccggtctcgaagcaaaattaatctgcccacca 26046157  T
Q  295 gaa 297  Q
    |||    
T  26046158 gaa 26046160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 22675456 - 22675513
Alignment:
Q  244 tgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    ||||||||||| |||||| | | ||||||||||||||||| |||||||||||||||||    
T  22675456 tgcagctagacgccaactcccggtctcgaagcaaaagtaaccggcccaccagaatcca 22675513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 33258834 - 33258952
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacct-gaaccaaagaactgactcccgatcacgaatta 149  Q
    ||||||||| | ||||  ||||||| ||||||||||||| |||| |||||||||||| ||||  ||| ||||||||||||| ||||| |||| ||||| |    
T  33258834 agcttccactatctctcgacctccgatccaccgaaagaa-accataaaaagcccaaatccaa--cctcgaaccaaagaactaactcctgatctcgaatca 33258930  T
Q  150 aaagcgataggtccaccagact 171  Q
    |||| ||| || ||||||||||    
T  33258931 aaagtgatcggcccaccagact 33258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 25992118 - 25992018
Alignment:
Q  70 acctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacct-gaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccag 168  Q
    ||||||| |||| ||||||||  |  |||||||||||||||||  ||| || | ||||||||||||| ||||| ||||| ||||||||| || |||||||    
T  25992118 acctccgatccatcgaaagaaatcataaaaagcccaaaaccaa--cctcgagctaaagaactgactctcgatctcgaatcaaaagcgattggcccaccag 25992021  T
Q  169 act 171  Q
    |||    
T  25992020 act 25992018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 25658296 - 25658354
Alignment:
Q  243 ttgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    ||||| |||||||  ||||||  |||||||||||||| ||||| |||||||||||||||    
T  25658296 ttgcaactagacattaacttccaatctcgaagcaaaattaatcagcccaccagaatcca 25658354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 34378210 - 34378109
Alignment:
Q  70 acctccggtccaccgaaagaataccaaa-aaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccag 168  Q
    ||||||||||||||||||||  || ||| ||||||||||| | || | ||   |||||||||||||||||||| ||||| ||||| ||| || |||||||    
T  34378210 acctccggtccaccgaaagagcacaaaacaaagcccaaaaaccaa-cttgtgtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccag 34378112  T
Q  169 act 171  Q
    |||    
T  34378111 act 34378109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 23426402 - 23426302
Alignment:
Q  124 aagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacac 223  Q
    |||||||||||||| ||| ||||| ||||| | | ||||||||||||| || ||||||| || | ||  |||||| | || |||||||||| || |||||    
T  23426402 aagaactgactcccaatctcgaatcaaaagtgttcggtccaccagacttcaggaccaaaccagacggttacccctaaaccccagtccaccaaagaaacac 23426303  T
Q  224 c 224  Q
    |    
T  23426302 c 23426302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 25658105 - 25658189
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaaaaa-agcccaaaaccaaaacctgaaccaaagaactgactccc 137  Q
    ||||| |||||| | | |||||| | ||||||||||| |||| ||| |||||||||| ||||| ||||  |||||||||||||||    
T  25658105 cttccgccacctatcaccctccgtttcaccgaaagaacaccataaatagcccaaaacaaaaacttgaattaaagaactgactccc 25658189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 25504831 - 25505111
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  25504831 aagttgagccgctattctaaatatcaattagcttccaccacctctgaaccttcggtccatcgaaagaacaccaaaaaagcccaaaaccaaaacctgaacc 25504930  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  25504931 aaagaactgactcccgatctcgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggcaccccttatcctcagtccaccataggaaca 25505030  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25505031 ccgtagccagcaaaatcagatagtagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 25505111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 28 - 301
Target Start/End: Original strand, 22885061 - 22885332
Alignment:
Q  28 gagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaaga 127  Q
    ||||| |||||||| | |||||| | |||||||||||||| |||||| ||||||||||||||| ||||||| | ||||||||| |||| |||||||||||    
T  22885061 gagccactattctatagatcaatcaacttccaccacctctcaacctctggtccaccgaaagaacaccaaaacaacccaaaacc-aaacttgaaccaaaga 22885159  T
Q  128 actgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgta 227  Q
    |||||||||||||| ||||| ||||| ||| || |||||||||| || || |||| ||   ||| |||||| | || || |||||||||| |||||||||    
T  22885160 actgactcccgatctcgaatcaaaagtgatcggcccaccagacttcaggatcaaacca-gcgggcacccctaacccccaatccaccagagcaacaccgta 22885258  T
Q  228 gccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    ||| ||||||  ||   ||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||    
T  22885259 gcccgccaaacaaggaagcagctagacaccaactcccgatctcgaagcaaaagtaaccggcccaccagcatcca 22885332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 301
Target Start/End: Complemental strand, 4472080 - 4471805
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| |||||||||| |||||| |||||| ||||||| ||| ||||||||||||| |||||| ||||| ||||||||||| |||| | |||| |    
T  4472080 aagttgagccactattctaaagatcaatcagcttctaccacctttga-cctccggtccaccaaaagaacaccaataaagcccaaaaacaaa-cttgaatc 4471983  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    ||||||||||||||||||| ||||| ||| ||||| || |||||||||| || ||||||| || | |||  ||||||| || | ||||||||||| ||||    
T  4471982 aaagaactgactcccgatctcgaatcaaaggcgatcggcccaccagactccaggaccaaaccagacggg-cccccttacccccggtccaccagagaaaca 4471884  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    | |||| ||||||||  | |  | || ||||| |||||| | ||||| ||||||||||||| |||||||||||||||||    
T  4471883 ctgtagtcagccaaacaataaagtagatagacgccaactcccgatcttgaagcaaaagtaaccggcccaccagaatcca 4471805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 27740133 - 27739855
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| |||||| | | |||||| || ||||||||||||| |||||| ||||||||||||||| ||||||| | ||||| ||| |||| ||||||    
T  27740133 aagttgagccactattccatagatcaatcagtttccaccacctctcaacctctggtccaccgaaagaacaccaaaacaacccaagacc-aaacttgaacc 27740035  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
     ||  |||||||| |||||  |||| ||||||||| || |||||||||| || ||||||  || | ||| |||||| | || |||||||||||| ||| |    
T  27740034 gaaacactgactctcgatcttgaatcaaaagcgatcggcccaccagacttcaggaccaatccagatgggcacccctaacccccagtccaccaga-gaaaa 27739936  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    |||||| | ||||||   ||  |||||||||||| |||| | ||||||||||| ||| |||||||||| ||||||||||||    
T  27739935 ccgtagtccgccaaacatgaaagcagctagacactaactcccgatctcgaagcgaaattaatcggcccgccagaatccagc 27739855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 15126344 - 15126601
Alignment:
Q  34 ctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgac 133  Q
    |||||||||| |||||| || ||||||||||||  ||||||||| |||||||||||| |||| |||||||||||||| |||| ||| ||||||||| |||    
T  15126344 ctattctaaagatcaataagtttccaccacctcacaacctccggaccaccgaaagaacaccataaaagcccaaaacc-aaacatgagccaaagaaccgac 15126442  T
Q  134 tcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagc 233  Q
    |||||||| ||||| ||||  ||| || |||||||||| || |||| ||  | | |||||||||||| || | ||||||||||| |       || || |    
T  15126443 tcccgatctcgaatcaaaaatgatcggcccaccagacttcaggacccaacgagacgggaaccccttacccccggtccaccagagaa-------agacaac 15126535  T
Q  234 caaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatc 299  Q
    ||||  ||| ||||||||||| |||||| | |||||||||||||||||||  | ||||||||||||    
T  15126536 caaacaagaatgcagctagacgccaactcccgatctcgaagcaaaagtaactgacccaccagaatc 15126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 45 - 290
Target Start/End: Complemental strand, 29487267 - 29487024
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacg 144  Q
    |||||| ||||||||||||| |  |||||| |||| |||||||||| | || || ||||||||| | |||| |||||| |||||||||||  | ||| ||    
T  29487267 atcaatcagcttccaccaccacacaacctctggtcaaccgaaagaacatcataacagcccaaaaaccaaacatgaaccgaagaactgactatcaatctcg 29487168  T
Q  145 aattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagatt 244  Q
    ||| ||||||||| || |||||||||| ||||| |||| || | ||| |||||| | || ||||||||||||| ||||||| |||| |||| |  |||      
T  29487167 aatcaaaagcgattgg-ccaccagacttcaagatcaaaccagacgggcacccctaacccccagtccaccagagaaacaccg-agcccgccagacaagaaa 29487070  T
Q  245 gcagctagacaccaacttctgatctcgaagcaaaagtaatcggccc 290  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||    
T  29487069 gcagctagacaccaactcccgatctcgaagcaaaagtaaccggccc 29487024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 33788559 - 33788702
Alignment:
Q  27 tgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaag 126  Q
    |||||| ||| |||| | |||||| |||||||||||||||| |||||| ||| ||||||||||| ||||||| | |||||| ||||| ||||||||||||    
T  33788559 tgagccactaatctatagatcaatcagcttccaccacctctcaacctctggttcaccgaaagaacaccaaaacaacccaaagccaaa-cctgaaccaaag 33788657  T
Q  127 aactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    ||||||||||| ||| ||||| ||||||||| || ||||||||||    
T  33788658 aactgactcccaatctcgaatcaaaagcgatcggcccaccagact 33788702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 3745489 - 3745359
Alignment:
Q  27 tgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaag 126  Q
    |||||| |||||||||| |||||| ||| |||||||| | | |||||| | ||||||||||||| | ||||||||||||||| |||||| | ||||||||    
T  3745489 tgagccactattctaaagatcaatcagcctccaccacttttaaacctctgatccaccgaaagaacaacaaaaaagcccaaaaacaaaacttaaaccaaag 3745390  T
Q  127 aactgactcccgatcacgaattaaaagcgat 157  Q
    |||||||| |||||| |||||||||||||||    
T  3745389 aactgacttccgatctcgaattaaaagcgat 3745359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 2063030 - 2062787
Alignment:
Q  40 taaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccga 139  Q
    |||| |||||| || |||||| |||||  |||||| ||| ||||||||||| ||||||||||||||||||| |||| ||| ||||||| |||||||||||    
T  2063030 taaagatcaatcagtttccacaacctcacaacctctggtacaccgaaagaacaccaaaaaagcccaaaacc-aaacttgagccaaagagctgactcccga 2062932  T
Q  140 tcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatc 239  Q
    || ||||| |||||| || || |||||||||                  ||| |||||||| || | ||||||||||| |  | ||||||||||||||      
T  2062931 tctcgaatcaaaagcaatcggcccaccagac------------------gggcacccctta-ccccggtccaccagagaatgatcgtagccagccaaaca 2062851  T
Q  240 agattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||| |||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||    
T  2062850 agaatgcagctagacaccaactcccgatctcgaagcaaaagtaattggcccaccagcatccagc 2062787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 43816384 - 43816470
Alignment:
Q  28 gagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaa 114  Q
    ||||| |||||||||| |||||| ||| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||    
T  43816384 gagccactattctaaagatcaatcagcctccaccacctttaaacctctggtccaccgaaagaataccaaaaaagcccaaaaccaaaa 43816470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 16960109 - 16959993
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaag 153  Q
    ||||||||| |||  |||||| ||||||||||||||| |||||| |||||||||||| |||| ||| ||||||||||||||| ||||| ||||| |||||    
T  16960109 cttccaccagctcacaacctctggtccaccgaaagaacaccaaataagcccaaaacc-aaacttgagccaaagaactgactctcgatctcgaatcaaaag 16960011  T
Q  154 cgataggtccaccagact 171  Q
    |||| || ||||||||||    
T  16960010 cgatcggcccaccagact 16959993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 293
Target Start/End: Original strand, 37770594 - 37770833
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaa 151  Q
    |||||||| |||||||  ||||||| | ||||||||||| |||| ||||||||||||||||||  ||| | |||||| ||||||| ||||  |||| |||    
T  37770594 agcttccaacacctctcgacctccgattcaccgaaagaa-accataaaagcccaaaaccaaaat-tgatctaaagaattgactcctgatccagaatcaaa 37770691  T
Q  152 agcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagcta 251  Q
    || ||| || |||||| ||   | |||||||||| | ||| |||||| | |||| || |||||||| |||||   | |  ||||||||  ||||| ||||    
T  37770692 agtgatcggcccaccaaaccttaggaccaaatcagatgggcacccctcaccctcggtacaccagagaaacactaaatcgcgccaaatcgaattgctgcta 37770791  T
Q  252 gacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||| | ||||||||||||||||||| |||||||||    
T  37770792 gacaccaactcccgatctcgaagcaaaagtaaccggcccacc 37770833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 31902352 - 31902484
Alignment:
Q  38 tctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactccc 137  Q
    |||||| |||| | ||||||| ||||| |  ||||||||||||||| || ||| | |||| |||| |||||||||| | ||||||| |||||||||||||    
T  31902352 tctaaagatcattcagcttcccccaccacgcaacctccggtccaccaaaggaacatcaaataagctcaaaaccaaa-cttgaaccagagaactgactccc 31902450  T
Q  138 gatcacgaattaaaagcgataggtccaccagact 171  Q
    |||| ||||||||||||||| || ||||||||||    
T  31902451 gatctcgaattaaaagcgattggcccaccagact 31902484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 16952332 - 16952434
Alignment:
Q  50 ttagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaa-gcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaatt 148  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||||||||| | |||||||| |||| ||| ||||||||||| ||||||||| |||||     
T  16952332 ttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaacc-aaacttgagccaaagaactggctcccgatctcgaatc 16952430  T
Q  149 aaaa 152  Q
    ||||    
T  16952431 aaaa 16952434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 17022997 - 17023099
Alignment:
Q  50 ttagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaa-gcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaatt 148  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||||||||| | |||||||| |||| ||| ||||||||||| ||||||||| |||||     
T  17022997 ttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaacc-aaacttgagccaaagaactggctcccgatctcgaatc 17023095  T
Q  149 aaaa 152  Q
    ||||    
T  17023096 aaaa 17023099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 17060303 - 17060405
Alignment:
Q  50 ttagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaa-gcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaatt 148  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||||||||| | |||||||| |||| ||| ||||||||||| ||||||||| |||||     
T  17060303 ttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaacc-aaacttgagccaaagaactggctcccgatctcgaatc 17060401  T
Q  149 aaaa 152  Q
    ||||    
T  17060402 aaaa 17060405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 3745340 - 3745239
Alignment:
Q  202 cctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    |||| ||||||||||| |||| ||||||| ||||||  ||| ||||||||||| |||||| | |||||| ||| |||||||| |||||||||||||||||    
T  3745340 cctcggtccaccagagaaacagcgtagcctgccaaacgagactgcagctagacgccaactcccgatctcaaagtaaaagtaaccggcccaccagaatcca 3745241  T
Q  302 gc 303  Q
    ||    
T  3745240 gc 3745239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 278
Target Start/End: Complemental strand, 18681177 - 18680969
Alignment:
Q  69 aacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccag 168  Q
    |||||| | |||||| || ||| |||| ||||||||||||||||| | ||||||| ||||||||||||||||| ||||| ||| || || || ||||||     
T  18681177 aacctctgatccaccaaaggaacaccacaaaagcccaaaaccaaa-cttgaaccagagaactgactcccgatctcgaatcaaatgcaatcggcccaccat 18681079  T
Q  169 actgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatc 268  Q
    ||| ||  ||||||||| ||||| |  ||||| || | |||||| |||| |||||||||| || |||||  | |  || ||||||| |||||| | ||||    
T  18681078 acttcataaccaaatcagaagggcagtccttacccccggtccactagagaaacaccgtagtcaaccaaacaataacgccgctagacgccaactcccgatc 18680979  T
Q  269 tcgaagcaaa 278  Q
    ||||||||||    
T  18680978 tcgaagcaaa 18680969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 283
Target Start/End: Original strand, 10173531 - 10173761
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaa-aaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    ||||||||||||||  ||||||| | ||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| ||| |||||| ||||| ||||    
T  10173531 cttccaccacctctcgacctccgattcaccgaaagaacaccaacaaaagcccaaaacc-aaacttgagccaaataacttacttccgatctcgaatcaaaa 10173629  T
Q  153 gcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctc-agtccaccagaggaacaccg-tagccagccaaatcagattgcagct 250  Q
    | ||| || |||| |||||  | ||||||| || ||| | | |||||  ||||  || |||||||| ||||||| || | |||||||  |||||||||||    
T  10173630 gtgatcggcccactagactttaggaccaaaacaaaagagca-cccttcacctctggtacaccagagaaacaccgttatcaagccaaacaagattgcagct 10173728  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaa 283  Q
    ||||||| ||||| |||| |||| |||||||||    
T  10173729 agacaccgacttccgatcccgaaacaaaagtaa 10173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 34230330 - 34230231
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    |||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||| | |||| ||| |||||||||||||||| |||| ||||| ||    
T  34230330 agcttccaccacctctcaacctccgatccaccgaaagaa-accacaaaaagcccaaaatc-aaacttgatccaaagaactgactcctgatctcgaataaa 34230233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 1269612 - 1269467
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||||||| ||||  ||||||| ||||| ||||||| |||| ||||| |||||||||||| | ||| |||||||||||||| |||||| ||||| ||    
T  1269612 agcttccaccaactctcgacctccgatccactgaaagaa-accataaaaatcccaaaaccaaa-cttgagccaaagaactgacttccgatctcgaatcaa 1269515  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaacccct 198  Q
    ||| ||| || ||||||||||  | ||| |||||| ||||| ||||||    
T  1269514 aagtgatcggcccaccagactttaggactaaatcagaagggcacccct 1269467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 27880054 - 27880185
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    ||||||||||  |||||| || |||||| ||||| |||||||||| | ||||||||| |||||||||| | ||||| ||||||||  | |||| ||||||    
T  27880054 aagttgagccattattctcaagatcaatcagctttcaccacctctcatcctccggtc-accgaaagaacaacaaaacagcccaaa--ccaaacttgaacc 27880150  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgat 157  Q
    ||| |||||||| |||||| ||||| |||| ||||    
T  27880151 aaataactgacttccgatctcgaatcaaaatcgat 27880185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 15710679 - 15710590
Alignment:
Q  210 caccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatc 299  Q
    |||||||| |||||  ||| ||||||||  |||||||| ||| ||||||||| | |||||| ||||||||||||| ||||||||||||||    
T  15710679 caccagagaaacactatagtcagccaaacaagattgcaactaaacaccaactcccgatctcaaagcaaaagtaattggcccaccagaatc 15710590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 17079282 - 17079199
Alignment:
Q  69 aacctccggtccaccgaaagaataccaaaaaa-gcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    |||||||| ||||||||||||| ||||||||| | |||||||| |||| ||| ||||||||||| ||||||||| ||||| ||||    
T  17079282 aacctccgatccaccgaaagaacaccaaaaaatgtccaaaacc-aaacttgagccaaagaactggctcccgatctcgaatcaaaa 17079199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 14566424 - 14566329
Alignment:
Q  205 cagtccaccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcc 300  Q
    ||||||||||||| |||||||||||  | ||||  | |  |||||||||||||||||   ||||||||||||||||| ||||||||  ||||||||    
T  14566424 cagtccaccagagaaacaccgtagctcgtcaaacaaaaaagcagctagacaccaactctcgatctcgaagcaaaagttatcggcccgtcagaatcc 14566329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 915405 - 915508
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaa 151  Q
    ||||||||||||| |  |||||||||| |||||||||||||| |||||   |||||||| |||| |||| |||| ||||||||  ||||| ||||| |||    
T  915405 agcttccaccaccgcgcaacctccggtgcaccgaaagaatactaaaaagctccaaaacc-aaacttgaatcaaa-aactgactttcgatctcgaatcaaa 915502  T
Q  152 agcgat 157  Q
    ||||||    
T  915503 agcgat 915508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 39338886 - 39338935
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||||||||||||| ||||| ||||||||| || ||||||||||    
T  39338886 caaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagact 39338935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 7874233 - 7874181
Alignment:
Q  241 gattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    ||||||||||||||||||||| | |||||||||||||||  || |||||||||    
T  7874233 gattgcagctagacaccaactcccgatctcgaagcaaaaaaaaccggcccacc 7874181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 12793669 - 12793743
Alignment:
Q  38 tctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaa 113  Q
    |||||| |||| | ||||||||||||| |  ||||||||||||| |||| ||| |||| |||||||||||||||||    
T  12793669 tctaaagatcattcagcttccaccaccgcacaacctccggtcca-cgaaggaacaccataaaagcccaaaaccaaa 12793743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 7696091 - 7696007
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccg 138  Q
    |||||||||||||||   |||| || ||||||||||||| |||  ||||||||||||||  ||| ||| ||||||||||||||||||    
T  7696091 agcttccaccacctcccgaccttcgatccaccgaaagaa-accgtaaaagcccaaaacc-taacttgagccaaagaactgactcccg 7696007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 15723103 - 15723049
Alignment:
Q  249 ctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||||||| |  |||||||| ||||||||| ||| |||||||||||||||    
T  15723103 ctagacaccaactccctatctcgaaccaaaagtaaccggtccaccagaatccagc 15723049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 41086749 - 41086810
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaa 113  Q
    ||||||||||||||||  ||||||| ||||||||||| | |||| ||||||||||||||||||    
T  41086749 agcttccaccacctctcgacctccgatccaccgaaagga-accataaaaagcccaaaaccaaa 41086810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 34581646 - 34581605
Alignment:
Q  260 cttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    |||| |||||||||||||||| ||||||||||||||| ||||    
T  34581646 cttccgatctcgaagcaaaagcaatcggcccaccagagtcca 34581605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 4162167 - 4162211
Alignment:
Q  247 agctagacaccaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    |||||||| | |||||||||||||||||||||||  |||||||||    
T  4162167 agctagactctaacttctgatctcgaagcaaaagcgatcggccca 4162211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 37 - 303
Target Start/End: Complemental strand, 5556715 - 5556449
Alignment:
Q  37 ttctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcc 136  Q
    ||||||| |||||  ||| |||||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||||||||    
T  5556715 ttctaaagatcaaccagcctccaccacctctaaacctccggtccaccgaaagaacacctgaaaagcccaaaaccaaaacttgaaccaaagaactgactcc 5556616  T
Q  137 cgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaa 236  Q
    ||||| ||||| ||||||||| |  |||||||||| ||||||||||||| ||||| |||||  |  ||| |||||| |||| |||| ||||||||| |||    
T  5556615 cgatctcgaatcaaaagcgatcgccccaccagactacaagaccaaatcaaaagggcaccccaaacactcggtccacgagagaaacatcgtagccagacaa 5556516  T
Q  237 atcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    |  ||||   ||||||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||    
T  5556515 acaagatgttagctagacaccaacttccgatctcgaatcaaaagtaaccggcccacctgaatccagc 5556449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 303
Target Start/End: Original strand, 30935326 - 30935592
Alignment:
Q  37 ttctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaat-accaaaaaagcccaaaaccaaaacctgaaccaaagaactgactc 135  Q
    ||||||| |||| | ||||||||||||| |  || ||||||||| | |||||||  ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  30935326 ttctaaagatcattcagcttccaccaccgcgtaatctccggtccgctgaaagaaacaccaaaaaagctcaaaaccaaa-cttgaaccaaataactaactc 30935424  T
Q  136 ccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagcca 235  Q
    ||||||  |||| |||||||||  | |||||| ||| ||| ||||||||| ||||| |||||||| || | ||||||||||| ||||| ||||||| |||    
T  30935425 ccgatcttgaatcaaaagcgatcagcccaccaaacttcaaaaccaaatcagaagggcaccccttacccccggtccaccagagaaacactgtagccaacca 30935524  T
Q  236 aatc-agattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    || | | | ||| ||||||| |||||| |  |||||||||||||| ||| ||||||| |||||||||||    
T  30935525 aaacaataatgccgctagacgccaactcccaatctcgaagcaaaa-taaccggcccatcagaatccagc 30935592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 301
Target Start/End: Original strand, 823386 - 823635
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaa-aagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||| |||||||| |||||| |||| |||||||||| ||||||| ||||||||||| ||||| ||||  ||| ||||||||| ||||| ||||| ||    
T  823386 agcttccgccacctctcaacctctggtctaccgaaagaacaccaaaataagcccaaaac-aaaacttgaatgaaacaactgactctcgatctcgaatcaa 823484  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagct 250  Q
    ||| ||| || |||  || || ||  |||||||   ||||| |||| ||| || | ||||||||||| |||||| || | |||||||  |||||||| ||    
T  823485 aagtgatcggcccattagtcttcataaccaaatttgaagggcaccctttacccacggtccaccagagaaacaccataacaagccaaacaagattgcaact 823584  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    ||||||||||| ||||||| ||||||||| ||| ||| |||||||||||||    
T  823585 agacaccaactcctgatcttgaagcaaaattaaccggtccaccagaatcca 823635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 1652823 - 1652975
Alignment:
Q  37 ttctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcc 136  Q
    ||||||| |||| | | ||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| |||||    
T  1652823 ttctaaagatcattcaacttccgccaccgcttaacctccggtccaccgaaagaacaccaaaaaagcccaaaacc-aaacttgaaccaaagaactaactcc 1652921  T
Q  137 cgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagg 190  Q
     |||| ||||| ||||| ||| || |||| ||| | || |||||||||| ||||    
T  1652922 tgatctcgaatcaaaagtgatcggcccacaagagttcaggaccaaatcagaagg 1652975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 57 - 303
Target Start/End: Complemental strand, 27399083 - 27398837
Alignment:
Q  57 ccaccacctctgaacctccggtccaccgaaagaatacc-aaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcg 155  Q
    ||||||||||| |||||| |||||||| |||||| ||| |||||||||||||||| |||| ||||||||| |||||||||| || | |||||  ||||||    
T  27399083 ccaccacctctcaacctctggtccaccaaaagaacaccaaaaaaagcccaaaacc-aaacttgaaccaaataactgactcctgacctcgaatctaaagcg 27398985  T
Q  156 ataggtccaccagactgcaagaccaaatcataagggaacccct-tatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagac 254  Q
    || |  ||||||||||    |||||||  | ||||| |||| | |  |||  |||||| |||| |||||| ||||||||||||  |||||| ||||||||    
T  27398984 attgtgccaccagactttcggaccaaaatagaagggcacccatctcgcct-ggtccactagagaaacaccatagccagccaaacaagattgtagctagac 27398886  T
Q  255 accaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    || |||| | ||||||||||||||| |||  ||  ||||||||||||||    
T  27398885 acaaactcccgatctcgaagcaaaaataactggtgcaccagaatccagc 27398837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 47945860 - 47945717
Alignment:
Q  27 tgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaag 126  Q
    |||||| |||||| ||| |||||||| |||||||||||||  || |||||| |||||||||||| |||| |||||||||||| | |||| ||| |||||     
T  47945860 tgagccactattcaaaagatcaattaacttccaccacctcacaatctccggaccaccgaaagaacaccataaaagcccaaaatc-aaacttgagccaaat 47945762  T
Q  127 aactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    ||||||||||||||| ||||| ||||| ||| || ||||| ||||    
T  47945761 aactgactcccgatctcgaatcaaaagtgatcggcccaccggact 47945717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 14879565 - 14879421
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||||||||||||  ||||||  ||||||||||||| |||| |||||| ||||||||||||| ||| |||| |||| ||||||||||| ||||| ||    
T  14879565 agcttccaccacctctcgacctcctatccaccgaaagaa-accataaaaagtccaaaaccaaaacttgatccaacgaacagactcccgatctcgaatcaa 14879467  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaaccc 196  Q
    ||| ||| || ||||||||||  | |||| ||||| ||||| ||||    
T  14879466 aagtgatcggcccaccagactttaggacccaatcagaagggcaccc 14879421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 33143893 - 33144019
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcac 143  Q
    |||||| |||||||||||||||   ||||| | ||||||||||||| |||| ||||||||||||| | || | ||| ||||||||||||||||||||| |    
T  33143893 atcaatcagcttccaccacctcgcgacctctgatccaccgaaagaa-accataaaaagcccaaaaactaatcttgatccaaagaactgactcccgatctc 33143991  T
Q  144 gaattaaaagcgataggtccaccagact 171  Q
    |||| ||||| ||| | |||||||||||    
T  33143992 gaatcaaaagtgatcgatccaccagact 33144019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 291
Target Start/End: Complemental strand, 25647809 - 25647575
Alignment:
Q  58 caccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaa-ccaaagaactgactcccgatcacgaattaaaagcg 155  Q
    ||||||||||  ||||||| |||||| |||||| |||| |||||||| |||||||||| || || |||||||||  |||||||||| ||||| ||||| |    
T  25647809 caccacctctcgacctccgatccaccaaaagaa-accataaaaagcctaaaaccaaaaacttaagccaaagaaccaactcccgatctcgaatcaaaagtg 25647711  T
Q  156 ataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcaga-ttgcagctagac 254  Q
    ||||| ||  ||||||  | |||||||||| ||||| |||| | |  | | || |||||||| ||||||  | |  |||||| |||| ||||||||||||    
T  25647710 ataggcccgtcagactttaggaccaaatcagaagggcacccttcactcccggtacaccagagaaacaccaaatcacgccaaa-cagaattgcagctagac 25647612  T
Q  255 accaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    ||| ||| | | ||||||||||||||||| |||||||    
T  25647611 accgactcccgttctcgaagcaaaagtaaccggccca 25647575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 286
Target Start/End: Complemental strand, 37123467 - 37123278
Alignment:
Q  96 aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaacc 195  Q
    ||||||||||||||||||   ||| ||||||||||||||||| ||| ||||| ||||| ||| || |||||| | |  | ||||||| |||||||| |||    
T  37123467 aaaaagcccaaaaccaaatt-tgatccaaagaactgactcccaatctcgaatcaaaagtgatcggcccaccaaaatttaggaccaaaacataagggcacc 37123369  T
Q  196 ccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcg 286  Q
    |||   | || || || ||||| ||||||  | |  ||||||  | |||||||||||||||| ||| | ||||||||||||||||||||||    
T  37123368 cctctccttcggtacatcagagaaacaccaaatcacgccaaacaaaattgcagctagacaccgactcccgatctcgaagcaaaagtaatcg 37123278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 14194027 - 14193924
Alignment:
Q  96 aaaaagcccaaaacc-aaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaac 194  Q
    ||||||||||||||| ||||| ||| ||||||||| ||||||| ||| ||||| ||||| ||| ||||| |||||||  | |||||||||| ||||| ||    
T  14194027 aaaaagcccaaaaccaaaaacttgagccaaagaaccgactcccaatctcgaatcaaaagtgatcggtccgccagactttaggaccaaatcagaagggcac 14193928  T
Q  195 ccct 198  Q
    ||||    
T  14193927 ccct 14193924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 38488908 - 38488836
Alignment:
Q  69 aacctccggtccaccgaaagaataccaaa-aaagcccaaaaccaaaacctgaaccaaagaactgactcccgatc 141  Q
    |||||||||||||||||||||| ||| || |||||||||||||||| | |||| ||||| ||||||||||||||    
T  38488908 aacctccggtccaccgaaagaacacctaacaaagcccaaaaccaaa-cttgaaacaaagcactgactcccgatc 38488836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 40023711 - 40023763
Alignment:
Q  241 gattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||    
T  40023711 gattgcagctagacaccaacttccgatctcgaagcaaaaataaccggtccacc 40023763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 291
Target Start/End: Original strand, 14755218 - 14755453
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    ||||||||| ||||  ||||||| |||| |||||||| || | |||||||||||| ||||   |  |||||||||||||||||||||||  |||| ||||    
T  14755218 cttccaccatctctcgacctccgatccatcgaaagaa-acaataaaaagcccaaatccaacctcgaaaccaaagaactgactcccgatcttgaatcaaaa 14755316  T
Q  153 gcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctag 252  Q
    | ||| || ||||||||||  |  || |||  | ||||| |||||| | | || || |||||||| ||||||  | |  || |||  |||||||||||||    
T  14755317 gtgatcggcccaccagactttagcacaaaa--aaaagggcacccctcaccttcggtacaccagagaaacaccaaaacgcgcgaaacaagattgcagctag 14755414  T
Q  253 acaccaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    | ||| ||| | ||||||||||||||||||| |||||||    
T  14755415 ataccgactcccgatctcgaagcaaaagtaaccggccca 14755453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 279
Target Start/End: Original strand, 23328300 - 23328527
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaa--aaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaatta 149  Q
    ||||||||| ||||||  ||||||| ||||||||||||  || |||  ||||| ||||| | || | ||| ||||| | || |||||||||| ||||| |    
T  23328300 agcttccacaacctctcgacctccgatccaccgaaagagcacaaaacaaaagctcaaaaaccaa-cttgagccaaaaagctaactcccgatctcgaatca 23328398  T
Q  150 aaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagc 249  Q
    |||| ||| ||||||||| |||  |  |||||||||  |||| ||||||   || | || |||||||| |||||| || | || ||||  | ||||||||    
T  23328399 aaagtgatcggtccaccaaactttagaaccaaatcaacagggcacccctcgcccccggtacaccagag-aacaccatatcaagtcaaacaaaattgcagc 23328497  T
Q  250 tagacaccaacttctgatctcgaagcaaaa 279  Q
    |||||||||||| | |||||||||||||||    
T  23328498 tagacaccaactcccgatctcgaagcaaaa 23328527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 39021222 - 39021342
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacg 144  Q
    |||||| |||| |||||| ||||  ||||||| |||||| ||||||| | | ||||||||||||||| | | ||| ||||||||||||||||||| | ||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaat-ctataaaagcccaaaaccaga-cttgatccaaagaactgactcccgacctcg 39021319  T
Q  145 aattaaaagcgataggtccacca 167  Q
    ||| ||||| ||| || ||||||    
T  39021320 aatcaaaagtgatcggcccacca 39021342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 4464074 - 4464127
Alignment:
Q  240 agattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||| ||||||||| ||| | ||||||||||||||||||| |||||||||    
T  4464074 agattgcaactagacaccgactcccgatctcgaagcaaaagtaaccggcccacc 4464127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 25594669 - 25594721
Alignment:
Q  251 agacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||| | | |||||||||| |||||||||||||||| |||||||||||    
T  25594669 agacaccaagtcccgatctcgaagaaaaagtaatcggcccatcagaatccagc 25594721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 46358331 - 46358399
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaa 113  Q
    |||||| |||||||||||||||| |||||||  ||||| ||||||| | ||||| |||||||| |||||    
T  46358331 atcaataagcttccaccacctctcaacctccaatccactgaaagaacatcaaaacagcccaaagccaaa 46358399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 47945663 - 47945591
Alignment:
Q  231 agccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    |||||||  ||| ||| ||||||| |||||| | ||||||||||| ||||||| |||| ||||||||||||||    
T  47945663 agccaaacaagaatgctgctagacgccaactcccgatctcgaagctaaagtaaccggcacaccagaatccagc 47945591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 9584074 - 9584123
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||||||||||||| ||||| ||||| ||| | |||||||||||    
T  9584074 caaagaactgactcccgatctcgaatcaaaagtgatcgatccaccagact 9584123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 17551017 - 17550968
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||||||||||||| ||||| ||||| ||| || ||||||||||    
T  17551017 caaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 17550968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 19176562 - 19176513
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||||||||||||| ||||| ||||| ||| || ||||||||||    
T  19176562 caaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 19176513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 43012435 - 43012386
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||||||||||||| ||||| ||||| ||| || ||||||||||    
T  43012435 caaagaactgactcccgatctcgaatcaaaagtgatcgggccaccagact 43012386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 12296333 - 12296054
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| ||| |||||| | |||  ||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||| |||| | ||||||    
T  12296333 aagttgagccactactctaaagaacaaccagcttccaccaccacacaacctccggtccaccgaaagaacaccaaaaaagcccaaaatcaaa-cttgaacc 12296235  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    ||||||||||||   |||| ||||| ||||||| | ||  ||||||||| || ||||||| || | ||| |||||||| || | |||||| |||||| ||    
T  12296234 aaagaactgacttttgatctcgaatcaaaagcgctcggcacaccagacttcaggaccaaaccagaggggcaccccttacccccggtccactagaggatca 12296135  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||| |||||||| ||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  12296134 ccgtagctagccaaataagaatgcagctagacgccaactcccgatctcgaagcaaaagtaatcggcccaccagaatccagc 12296054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 303
Target Start/End: Original strand, 46698712 - 46698986
Alignment:
Q  28 gagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaaga 127  Q
    ||||| |||||||||| || ||| |||||||||||| | | |||||||  || |||||||||| ||| ||| ||||||||| |||||| |||||||||||    
T  46698712 gagccactattctaaagatgaatcagcttccaccacttttaaacctccaatctaccgaaagaacacctaaacagcccaaaaacaaaacttgaaccaaaga 46698811  T
Q  128 actgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgta 227  Q
    |||||||||||||| ||||| |||||| || || |||||||||| || |||||||||| ||||| |||||  | |||| |||||||| || ||| | |||    
T  46698812 actgactcccgatctcgaatcaaaagcaatcggcccaccagactacaggaccaaatcagaagggcaccccacaccctcggtccaccaaagaaactctgta 46698911  T
Q  228 gccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||   |||||  ||| |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  46698912 gcttaccaaacaagactgcagctagacaccaactcccgatctcgaagcaaaagtaatcggccca-cagaatccagc 46698986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 45 - 294
Target Start/End: Original strand, 53823366 - 53823614
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcac 143  Q
    |||||| | ||||||||||||||  |||| || || |||||||||| |||| ||||| |||||||||||| | ||| ||||||||||||||||||||| |    
T  53823366 atcaatcaacttccaccacctctcgaccttcgatcaaccgaaagaa-accataaaaaacccaaaaccaaa-cttgagccaaagaactgactcccgatctc 53823463  T
Q  144 gaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagat 243  Q
    |||| ||||| ||| |||||||||||||  | |||||||||| ||||| |||||| | |  | || |||||||| ||||||    | ||||||   ||||    
T  53823464 gaatcaaaagtgattggtccaccagactttatgaccaaatcagaagggcacccctcacctccggtacaccagagaaacaccaagtcaagccaagcaagat 53823563  T
Q  244 tgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacca 294  Q
    ||||| |||||||| ||| | ||||||||||||||||||| ||||||||||    
T  53823564 tgcagttagacaccgactcccgatctcgaagcaaaagtaaccggcccacca 53823614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 293
Target Start/End: Original strand, 19815165 - 19815416
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaacca---aaacctgaaccaaagaactgactcccgatc 141  Q
    |||| ||||||||||||| ||||  ||||||||||||||||||||| |||||  || |||||||| |   |||| ||| |||||||||||||||| ||||    
T  19815165 atcatttagcttccaccatctctcgacctccggtccaccgaaagaacaccaatcaaacccaaaactaattaaacttgagccaaagaactgactcctgatc 19815264  T
Q  142 acgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcag 241  Q
     ||||| |||||  || |||||||||||||  | ||||||| || ||||| |||||| | || | ||| ||||||  || ||  || | |||||||  ||    
T  19815265 tcgaataaaaagtaatcggtccaccagactttaggaccaaaacagaagggcacccctcacccccggtcaaccagaaaaatacaatatcaagccaaacaag 19815364  T
Q  242 attgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||||||||| |||   |||||||||||||||||||  ||||||||    
T  19815365 attgcagctagacaccgactctcgatctcgaagcaaaagtaactggcccacc 19815416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 35800615 - 35800471
Alignment:
Q  55 ttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagc 154  Q
    |||||||||| |  |||||||||||||||||||||| ||||||||||||||||||| ||||  ||| ||||||||||||| |||||| ||||| ||||||    
T  35800615 ttccaccaccgcgaaacctccggtccaccgaaagaacaccaaaaaagcccaaaacc-aaactggaatcaaagaactgacttccgatctcgaatcaaaagc 35800517  T
Q  155 gataggtccaccagactgcaagaccaaatcataagggaacccctta 200  Q
    ||| ||| ||||||||| ||  ||||||||| ||||| ||| ||||    
T  35800516 gatcggttcaccagacttcagaaccaaatcagaagggcaccactta 35800471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 303
Target Start/End: Complemental strand, 38929974 - 38929713
Alignment:
Q  34 ctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgac 133  Q
    |||||| ||| |||||| | |||||||||||||  |||||||||  ||||||||||| |||| |||||||||||| | |||| ||| |||||||||||||    
T  38929974 ctattccaaagatcaatcaacttccaccacctcacaacctccggatcaccgaaagaacaccataaaagcccaaaatc-aaacttgagccaaagaactgac 38929876  T
Q  134 tcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagc 233  Q
    ||  |||| ||||| ||||| ||| || ||| |||||| || |||| || || | ||| |||||||| || | ||||||||||| |        |||| |    
T  38929875 tcttgatctcgaatcaaaagtgatcggcccagcagacttcaggacccaaccagacgggcaccccttacccccggtccaccagagaa-------tgccaac 38929783  T
Q  234 caaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||  ||| |  ||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  38929782 caaacaagaatagagctaaacgccaacttccgatctcgaagcaaaagtaaccggcccaccagaatccagc 38929713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 292
Target Start/End: Complemental strand, 19673240 - 19672991
Alignment:
Q  41 aaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgat 140  Q
    |||||||| ||||||||||||| || |  |||  || ||||||||||||| ||||| ||| |||||||| ||| | ||| |||||||||||||||| |||    
T  19673240 aaatatcatttagcttccaccatctatcgaccgtcgatccaccgaaagaacaccaacaaaacccaaaactaaa-cttgagccaaagaactgactcctgat 19673142  T
Q  141 cacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatca 240  Q
    | |||| |||||| ||  |||||||||||||  | ||||||| || ||||| |||||| | || |  || ||||||| || | | || | |||||||  |    
T  19673141 ctcgaa-taaaagggaatggtccaccagactttaggaccaaaacagaagggcacccctcacccccgatcaaccagagaaatatcatatcaagccaaacaa 19673043  T
Q  241 gattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccac 292  Q
    ||||||||||||||||  ||| | ||||||||||||||||||| ||||||||    
T  19673042 gattgcagctagacactgactcccgatctcgaagcaaaagtaaccggcccac 19672991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 303
Target Start/End: Complemental strand, 28967021 - 28966753
Alignment:
Q  27 tgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaag 126  Q
    |||||| |||||||| | |||||| |||||||||||||||  ||||||||| |||||||||||| | |  |||||||||||||| |||| ||| ||||||    
T  28967021 tgagccactattctagagatcaatcagcttccaccacctcacaacctccggaccaccgaaagaacatcctaaaagcccaaaacc-aaacttgagccaaag 28966923  T
Q  127 aactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgt 226  Q
    ||||||||||| ||| ||||| |||| |||| |  | |||||||| || |||| ||  | | |||  || |||| || | ||||||  ||| |           
T  28966922 aactgactcccaatctcgaatcaaaaacgatcgccctaccagacttcaggacccaactagacgggcgccacttacccccggtccacttgagaa------- 28966830  T
Q  227 agccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
     | |||||||| | || ||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  28966829 tgtcagccaaacctgaatgcagctagacgccaacttccgatctcgaagccaaagtaaccggcccaccagaatccagc 28966753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 39420954 - 39421190
Alignment:
Q  41 aaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccga 139  Q
    |||||||||| || |||||||||||||  | ||||| |||||||||| || |||| |||||||||||||||||||| ||| | || ||| ||||||||||    
T  39420954 aaatatcaatcagtttccaccacctctcgatctccgatccaccgaaaaaa-accataaaaagcccaaaaccaaaac-tgatctaaggaattgactcccga 39421051  T
Q  140 tcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatc 239  Q
    || ||||| ||||| ||| || ||||||| ||  ||||||| |||| ||||| |||||| | ||||||| ||  |||| ||||||  | |  ||||||      
T  39421052 tctcgaatcaaaagtgatcggcccaccaggctataagaccatatcagaagggcacccctcaccctcagtacattagagaaacaccaaatcacgccaaaca 39421151  T
Q  240 agattgcagctagacaccaacttctgatctcgaagcaaa 278  Q
    |||||||||||||||||| | | | ||||||||||||||    
T  39421152 agattgcagctagacaccgattcccgatctcgaagcaaa 39421190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 301
Target Start/End: Original strand, 21387158 - 21387402
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaag 153  Q
    |||||| ||| ||| |||||||||||||| ||| ||| ||||||  ||||||||   ||||| |||| | ||||||||||| |||||| ||||| |||||    
T  21387158 cttccatcacatctcaacctccggtccactgaacgaacaccaaattagcccaaata-aaaacttgaatcgaagaactgacttccgatctcgaatcaaaag 21387256  T
Q  154 cgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctaga 253  Q
     ||| ||||||||||||| ||  ||||||||| ||||| |  ||| | || |  ||||||||||  ||| | || ||| ||||| ||||||||  |||||    
T  21387257 tgatcggtccaccagactccagcaccaaatcagaagggtattcctcacccccgatccaccagag--acatcataaccaaccaaaccagattgctactaga 21387354  T
Q  254 caccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
     ||||||| | |||||||||||||| | || | |||||||||||||||    
T  21387355 taccaactcccgatctcgaagcaaatgcaaacagcccaccagaatcca 21387402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 293
Target Start/End: Original strand, 22811114 - 22811351
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    |||||||||||||| |||||||  |||| ||| |||| |||| |||||||| ||||||||| | ||| ||||||||||||||||||||| ||||| ||||    
T  22811114 cttccaccacctctcaacctccaatccatcgagagaa-accataaaaagcctaaaaccaaa-cttgagccaaagaactgactcccgatctcgaataaaaa 22811211  T
Q  153 gcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctag 252  Q
      ||| || ||||||||||  |||||||||||| ||||| || ||| | || |  | |||||||| ||||||  | |   |||||  | |||||| ||||    
T  22811212 atgatcggcccaccagactttaagaccaaatcagaagggcactcctca-ccccgatacaccagagaaacaccaaatcacaccaaacaaaattgcaactag 22811310  T
Q  253 acaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    ||||||| ||| ||||||||||||||||||| || ||||||    
T  22811311 acaccaagttccgatctcgaagcaaaagtaaccgacccacc 22811351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 301
Target Start/End: Complemental strand, 16501842 - 16501614
Alignment:
Q  72 ctccggtccaccgaaagaat-acc-aaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccaga 169  Q
    |||||||||||||||||||  ||| ||||||||||||||||||| |  |||||||||| ||||||||||||| ||||| ||||||||| || |||||| |    
T  16501842 ctccggtccaccgaaagaaacacctaaaaaagcccaaaaccaaa-ctagaaccaaagagctgactcccgatctcgaatcaaaagcgatcggcccaccaaa 16501744  T
Q  170 ctgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatc-agattgcagctagacaccaacttctgatc 268  Q
    || || || ||||||  ||||  ||| |  | || | | ||||||||| ||||||  |||||| |||| | | |||||||  |||||||| || | ||||    
T  16501743 cttcaggatcaaatcggaaggccaccac--acccccggaccaccagagaaacaccaaagccagtcaaaacaaaattgcagtaagacaccagctcccgatc 16501646  T
Q  269 tcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    ||||||||||| ||||||||||||||| |||||    
T  16501645 tcgaagcaaaa-taatcggcccaccagcatcca 16501614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 21983755 - 21983863
Alignment:
Q  34 ctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgac 133  Q
    |||||||||| |||||| | |||||||||||||  ||||||||| |||||||||||| |||| ||||||||| || | |||| ||| |||||||||||||    
T  21983755 ctattctaaagatcaatcaacttccaccacctcacaacctccggaccaccgaaagaacaccataaaagcccataa-ctaaacttgagccaaagaactgac 21983853  T
Q  134 tcccgatcac 143  Q
    |||| |||||    
T  21983854 tcccaatcac 21983863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 21988046 - 21988121
Alignment:
Q  228 gccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||||  ||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||    
T  21988046 gccagccaaacaagaatgcagctagacaccaactcctgatctcgaaacaaaagtaaccggcccaccagaattcagc 21988121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 279
Target Start/End: Complemental strand, 25753283 - 25753075
Alignment:
Q  70 acctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccag 168  Q
    ||||||| ||||||||||||| || | ||||||||||||| |||| | ||| ||||||||||||||||||||| ||||| ||||| ||| |  |||||||    
T  25753283 acctccgatccaccgaaagaa-acaataaaaagcccaaaatcaaa-cttgagccaaagaactgactcccgatctcgaatcaaaagtgatcgccccaccag 25753186  T
Q  169 actgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatc 268  Q
    |||  | |||||||| | | ||| || ||| | |  | || |||||||| ||||||  | |  ||||||  |||||||||||||||||| ||| | ||||    
T  25753185 actttaggaccaaataagacgggcactcctcacctccggtacaccagagaaacaccacatcacgccaaacaagattgcagctagacaccgactcccgatc 25753086  T
Q  269 tcgaagcaaaa 279  Q
    |||||||||||    
T  25753085 tcgaagcaaaa 25753075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 2061692 - 2061808
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaag 153  Q
    ||||||||||||||  ||||||| |||||||||||||  |   |||||||||||| ||||| |||| ||||||||||||||| | ||| ||||| |||||    
T  2061692 cttccaccacctctcgacctccgatccaccgaaagaaatcatcaaaagcccaaaatcaaaa-ctgatccaaagaactgactctcaatctcgaatcaaaag 2061790  T
Q  154 cgataggtccaccagact 171  Q
     |||  | ||||||||||    
T  2061791 tgatcagcccaccagact 2061808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 24740071 - 24740172
Alignment:
Q  69 aacctccggtccaccgaaagaataccaaaaa-agcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccacca 167  Q
    |||||||| ||||| |||||||   |||||| ||||||||||||||   ||||||||| |||||||||||||||  |||||| ||||||| || ||||||    
T  24740071 aacctccgatccacggaaagaacgacaaaaagagcccaaaaccaaatt-tgaaccaaataactgactcccgatcttgaattataagcgatcggcccacca 24740169  T
Q  168 gac 170  Q
    |||    
T  24740170 gac 24740172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 50102487 - 50102414
Alignment:
Q  230 cagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||  ||| |||| |||||| ||||||||  ||||||||||||||||||||||   |||||||||||||    
T  50102487 cagccaaacaagaatgcaactagacgccaacttccaatctcgaagcaaaagtaatcggttgaccagaatccagc 50102414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 43374031 - 43374122
Alignment:
Q  37 ttctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaac 129  Q
    ||||||| |||||| ||||||||||||| |  |||||||| ||||| ||||||| ||||||||| | | ||| | |||| |||||||||||||    
T  43374031 ttctaaagatcaatcagcttccaccaccgcgcaacctccgatccactgaaagaacaccaaaaaacctcgaaatc-aaacttgaaccaaagaac 43374122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 6599945 - 6600015
Alignment:
Q  100 agcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||| ||||| |||| |||||||| ||||||||||| | ||| ||||||||| || ||||||||||    
T  6599945 agcccaaaac-aaaacttgaatcaaagaaccgactcccgatctctaatcaaaagcgatcggcccaccagact 6600015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 6600076 - 6600147
Alignment:
Q  231 agccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccag 302  Q
    |||||||  |||||||| ||||||||||||| | |||||| |||||||| ||| ||||| | ||||||||||    
T  6600076 agccaaacaagattgcaactagacaccaactcccgatctcaaagcaaaattaaccggcctatcagaatccag 6600147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 36962650 - 36962688
Alignment:
Q  263 ctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  36962650 ctgatctcgaatcaaaagtaatcggcccaccagactcca 36962688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 2825725 - 2825673
Alignment:
Q  241 gattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||||||||||||||    |||||||||||||  |||||||||||||    
T  2825725 gattgcagctagacaccaactctcaatctcgaagcaaatataatcggcccacc 2825673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 31050801 - 31050853
Alignment:
Q  241 gattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||||| |||| ||| | | ||||||||||||||||| |||||||||    
T  31050801 gattgcagctagtcaccgactcccggtctcgaagcaaaagtaaccggcccacc 31050853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 41117901 - 41118019
Alignment:
Q  34 ctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactga 132  Q
    |||||| ||| |||| | ||||||||||||||||  ||||| | |||| |||||||| |||| |||||||||||||||  ||  ||| |||||||||| |    
T  41117901 ctattcgaaagatcattcagcttccaccacctctcgacctctgatccatcgaaagaa-accataaaaagcccaaaacc-taatttgagccaaagaactta 41117998  T
Q  133 ctcccgatcacgaattaaaag 153  Q
    || |||||| ||||| |||||    
T  41117999 cttccgatctcgaatcaaaag 41118019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 303
Target Start/End: Original strand, 11379052 - 11379329
Alignment:
Q  24 agttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacca 123  Q
    |||||||||  ||||||||| |||||| ||| |||||||||| | |||||| |||| |||  ||||| |||||||||||||||||||||||| |||||||    
T  11379052 agttgagccattattctaaagatcaatcagcctccaccacctataaacctctggtcaacc--aagaacaccaaaaaagcccaaaaccaaaacttgaacca 11379149  T
Q  124 aagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacac 223  Q
    ||| |||||||||||||| ||||| ||||||||| ||  ||||||||| || |||||||| | ||||| |||||  | |||| ||||||||||| |||||    
T  11379150 aagtactgactcccgatctcgaatcaaaagcgatcggctcaccagactacatgaccaaattagaagggcaccccaaaccctcggtccaccagagaaacac 11379249  T
Q  224 cgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||| ||||||||  |||||| ||||||||||||||| | ||||| ||| ||||| ||| || ||||| ||||||||||    
T  11379250 cgtagtcagccaaacaagattgtagctagacaccaactcccgatcttgaatcaaaaataaccgacccactagaatccagc 11379329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 303
Target Start/End: Complemental strand, 13311986 - 13311717
Alignment:
Q  34 ctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgac 133  Q
    ||||||||||||||||| |||| ||||||||||| ||||||  ||||| ||||||||  |||||| ||||||| ||| || | |||||||||||||||||    
T  13311986 ctattctaaatatcaatcagctcccaccacctctcaacctctagtccatcgaaagaacgccaaaacagcccaacacctaa-cttgaaccaaagaactgac 13311888  T
Q  134 tcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccag- 232  Q
    |||||||| ||||| ||||| ||| || |||||||||| || ||||||| || | ||| ||||||||||| | ||||||||||| |||| || || |||     
T  13311887 tcccgatctcgaatcaaaagtgatcggcccaccagactacatgaccaaaccagacgggcaccccttatccccggtccaccagagaaacaacgaagtcagt 13311788  T
Q  233 ccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    | |||| ||| ||||| |||||||||||| | |||||||||| ||||||| ||||||||||||||||||||    
T  13311787 caaaataagaatgcagttagacaccaactcccgatctcgaaggaaaagtactcggcccaccagaatccagc 13311717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 34 - 303
Target Start/End: Original strand, 47456956 - 47457217
Alignment:
Q  34 ctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgac 133  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||| |||||||||||| |||| ||||||||| || | |||| ||| |||||||||||||    
T  47456956 ctattctaaagatcaattagcttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataa-ctaaacttgagccaaagaactgac 47457054  T
Q  134 tcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagc 233  Q
    |||| ||| | ||| ||||||||| |||||| |||||| || |||| ||||| | ||| |||||||| || |  |||||||||| |        || |||    
T  47457055 tcccaatctcaaatcaaaagcgatcggtccatcagacttcaggacctaatcagacgggcaccccttacccccgatccaccagagaa-------tgctagc 47457147  T
Q  234 caaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||  ||| |||||| |||| |||||| | ||||||||| ||||||||  |||||||||||||||||||    
T  47457148 caaacaagaatgcagccagacgccaactcccgatctcgaatcaaaagtatccggcccaccagaatccagc 47457217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 53 - 283
Target Start/End: Complemental strand, 36449212 - 36448982
Alignment:
Q  53 gcttccaccacctctgaacctccggtccaccgaaagaataccaaaa-aagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaa 151  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||| ||| |||||| || ||| ||||||||||||||||||||  ||| |||| ||||    
T  36449212 gcttccaccacctctcaacctccgatccaccgaaagaaaaccaaaataagtccaaaa-cataacttgaaccaaagaactgactcctaatctcgaa-taaa 36449115  T
Q  152 agcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaa-tcagattgcagct 250  Q
    | ||||| | |||| ||||| ||||| ||||||| ||||| |||||| | || |  |||||||||| |||||| || |||||||||  || ||| ||| |    
T  36449114 aacgataagcccactagacttcaagatcaaatcagaagggcacccctcacccccgatccaccagagaaacaccctaaccagccaaacacaaattacaggt 36449015  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaa 283  Q
    | |||||||| ||  ||||||||||||||||||    
T  36449014 atacaccaacctccaatctcgaagcaaaagtaa 36448982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 52 - 293
Target Start/End: Complemental strand, 8745282 - 8745042
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||||| ||||||  ||||||| ||||||||||||| |||| ||||||||||||||| |||| ||| |||| ||||||| |||||||| ||||| ||    
T  8745282 agcttccacaacctctcgacctccgatccaccgaaagaa-accataaaaagcccaaaacc-aaacttgatccaacgaactgaatcccgatctcgaatcaa 8745185  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagct 250  Q
    ||| ||| || |||||||| |  | |||||||||| ||||  |||||| | |||| || |||||||| ||||||  | |   |||||  | |||||||||    
T  8745184 aagtgatcggcccaccagaatttaggaccaaatcagaaggccacccctcaccctcggtgcaccagagaaacaccagatcacaccaaacaacattgcagct 8745085  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||  |||| ||||||||||||||||||| |||||||||    
T  8745084 agacaccgccttccgatctcgaagcaaaagtaaccggcccacc 8745042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 46133214 - 46133414
Alignment:
Q  38 tctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaa-aagcccaaaaccaaaacctgaaccaaagaactgactcc 136  Q
    |||||| |||||| ||||||| ||||| |  |||||||||||||||||| ||| ||||||| |||||||||| | |||| ||||||| ||||||||||||    
T  46133214 tctaaagatcaatcagcttcccccaccacgcaacctccggtccaccgaaggaacaccaaaaaaagcccaaaaaccaaacttgaaccagagaactgactcc 46133313  T
Q  137 cgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaa 236  Q
    ||||| | ||| ||||||||| ||  ||||||||| ||  ||||||||| ||||| || ||| | |  | ||||||||||| ||||||| ||||| ||||    
T  46133314 cgatctcaaatcaaaagcgatcggctcaccagacttcagcaccaaatcagaagggcactcctaacctccggtccaccagagaaacaccgaagccaaccaa 46133413  T
Q  237 a 237  Q
    |    
T  46133414 a 46133414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 22568045 - 22568168
Alignment:
Q  34 ctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgac 133  Q
    |||||||||| |||||| || || |||||||||| ||||| |||||| ||||||||| ||| |||||  |||||| |||||| ||||||||| |||| ||    
T  22568045 ctattctaaagatcaatcagttttcaccacctctcaaccttcggtccgccgaaagaacacctaaaaaatccaaaatcaaaacttgaaccaaaaaactaac 22568144  T
Q  134 tcccgatcacgaattaaaagcgat 157  Q
    |||||||||||||| |||||||||    
T  22568145 tcccgatcacgaatcaaaagcgat 22568168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 297
Target Start/End: Complemental strand, 3478481 - 3478237
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaa 151  Q
    ||||||| ||||||||  | ||||| ||||||||||||| ||||| ||||||||||| | || | ||| |||||||||| |||||||||| ||||| |||    
T  3478481 agcttccgccacctctcgatctccgatccaccgaaagaacaccaacaaagcccaaaa-ctaatcttgagccaaagaactaactcccgatctcgaatcaaa 3478383  T
Q  152 agcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagcta 251  Q
    || ||| || |||||| |||  | ||||||| || ||||| |||||| | || |  || || |||| |  ||| || | ||||||| || ||||||||||    
T  3478382 agtgatcggcccaccaaactttaggaccaaaacagaagggcacccctcacccccgatcaactagagaattaccctatcaagccaaaccaaattgcagcta 3478283  T
Q  252 gacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaa 297  Q
    | |||| ||| | |||| |||||||||||||||||||||| |||||    
T  3478282 gtcaccgactcccgatcccgaagcaaaagtaatcggcccatcagaa 3478237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 52 - 296
Target Start/End: Complemental strand, 34390093 - 34389848
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaa--aaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaatta 149  Q
    ||||||||| ||||||  ||||||| ||||||||||||  || |||  ||||||||||| | || | | | ||||||| ||||||||||||| ||||| |    
T  34390093 agcttccacaacctctcgacctccgatccaccgaaagagcacaaaataaaagcccaaaaaccaa-cttaagccaaagagctgactcccgatctcgaatca 34389995  T
Q  150 aaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatca-gattgcag 248  Q
    |||| ||| || ||||||||||  || |||||||||  |||| || ||| | || |||| |||||||| |||||| || | || |||| || |||||||     
T  34389994 aaagtgatcggcccaccagactttaaaaccaaatcagcagggcactcctcacccccagtacaccagag-aacaccatatcaagtcaaaacatgattgcaa 34389896  T
Q  249 ctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccaga 296  Q
    ||||||||||||||||||||||||||||||| |||  |||||| ||||    
T  34389895 ctagacaccaacttctgatctcgaagcaaaaataactggcccatcaga 34389848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 48058577 - 48058724
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| |||||||||| |||||| |||||||||||||||  ||||||| | |||||||||||| | || ||||| |||||||| |||| ||| ||    
T  48058577 aagttgagccactattctaaagatcaatcagcttccaccacctcacaacctccagaccaccgaaagaacaacataaaaggccaaaacc-aaacttgagcc 48058675  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    ||| |||||||| |||||| | ||| ||||||||| |  ||||||||||    
T  48058676 aaaaaactgacttccgatctcaaatcaaaagcgatcgacccaccagact 48058724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 24324749 - 24324895
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||||||||| ||  ||||||| |||||| |||||| |||| |||||||||||||||||||| ||| |||||||| |||||||||||| ||||| ||    
T  24324749 agcttccaccacccctcgacctccgatccacctaaagaa-accataaaaagcccaaaaccaaaacttgagccaaagaattgactcccgatctcgaatcaa 24324847  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaacccct 198  Q
    ||  ||| || |||||| |||  |||||||||||| ||||| ||||||    
T  24324848 aattgatcggcccaccaaactttaagaccaaatcagaagggcacccct 24324895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 38485698 - 38485501
Alignment:
Q  38 tctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactccc 137  Q
    |||||| |||| | |||||||||||||    ||||||||||||| |||| ||| |||||||||||||||||||||| |  |||||| | | |||||||||    
T  38485698 tctaaagatcattcagcttccaccaccgtgcaacctccggtccatcgaaggaacaccaaaaaagcccaaaaccaaa-ctagaaccagata-ctgactccc 38485601  T
Q  138 gatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaa 237  Q
    |||| ||||| ||||| ||| || |||||||||| ||  || || ||| ||||| |||||||| || ||||||||||||| |||||  |||||| |||||    
T  38485600 gatctcgaatcaaaagtgatcggcccaccagacttcagaacaaattcagaagggcaccccttacccccagtccaccagagaaacactatagccaaccaaa 38485501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 12481031 - 12480878
Alignment:
Q  37 ttctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaatacc-aaaaaagcccaaaaccaaaacctgaaccaaagaactgactc 135  Q
    ||||||| |||||| | | ||||||||| |  || |||| |||||||||||||| ||| ||||||||| ||||||||| | |||||||||||||||||||    
T  12481031 ttctaaaaatcaatcatcctccaccaccgcacaatctccagtccaccgaaagaacacctaaaaaagccaaaaaccaaa-cttgaaccaaagaactgactc 12480933  T
Q  136 ccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagg 190  Q
    |||||| ||||| ||||||||| || |||||| ||| || ||| |||||| ||||    
T  12480932 ccgatctcgaatcaaaagcgatcggcccaccaaacttcaggacaaaatcagaagg 12480878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 293
Target Start/End: Original strand, 6716682 - 6716928
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcac 143  Q
    |||||| ||||||||||||||||  || || | ||||||||||||| |||| ||||| ||||| |||||| | ||| ||||||||||||||||||||| |    
T  6716682 atcaatcagcttccaccacctctcgacttc-gatccaccgaaagaa-accataaaaaacccaagaccaaa-cttgagccaaagaactgactcccgatctc 6716778  T
Q  144 gaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagat 243  Q
    |||| ||||| ||| || | ||||||||  | ||  |||||| ||||| |||||| |  ||| || |||||||| |||| |  | | |||||||| ||||    
T  6716779 gaatcaaaagtgatcggccaaccagactttatgattaaatcagaagggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaataagat 6716878  T
Q  244 tgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||||||| ||| | |||||| ||| ||||||||  ||||||||    
T  6716879 tgcagctagacaccgactcccgatctcaaagtaaaagtaactggcccacc 6716928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 9107319 - 9107042
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| ||||||||||  |||   | | |||||||||||| |||||||   |||||||||||| || ||||||||||||||  ||||| ||||      
T  9107319 aagttgagccactattctaaagttcacccaacatccaccacctctcaacctccttcccaccgaaagaacacaaaaaaagcccaaaa--aaaacttgaaaa 9107222  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    ||| || ||| | |||||  ||||| ||||| ||| |  |||||||||| || |||||||| ||| |||||||| | | ||   |||||||| || ||||    
T  9107221 aaa-aattgatttccgatgtcgaatcaaaagagatcgtcccaccagacttcatgaccaaatgatacgggaacccatcacccctggtccaccaaagaaaca 9107123  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    || ||||||| ||||  |||||| |||||||| |||||| |  |||||||||||||||| ||  |||||||| ||||||||    
T  9107122 ccatagccaggcaaacaagattgtagctagactccaactaccaatctcgaagcaaaagtgattagcccaccaaaatccagc 9107042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 279
Target Start/End: Complemental strand, 1320919 - 1320697
Alignment:
Q  57 ccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcg 155  Q
    ||||| |||||  ||||||| ||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||| |||||   |||| ||||| |    
T  1320919 ccaccccctctcgacctccgatccaccgaaagaa-accataaaaagcccaaaaccaaaacttgagccaaagaactgacttccgattttgaatcaaaagtg 1320821  T
Q  156 ataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagaca 255  Q
    || || ||||||||||  | |||||||||| ||||| |||||| | || |  | || ||||| ||||||  |    ||||||  | ||| ||||||||||    
T  1320820 atcggcccaccagactttatgaccaaatcaaaagggcacccctcacccccgatacatcagagaaacaccaaattgcgccaaacaaaattacagctagaca 1320721  T
Q  256 ccaacttctgatctcgaagcaaaa 279  Q
    |||||| | |||||||||||||||    
T  1320720 ccaactcccgatctcgaagcaaaa 1320697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 291
Target Start/End: Complemental strand, 16954739 - 16954544
Alignment:
Q  96 aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaacc 195  Q
    |||||||||||||||||||| |||  |||||||||||||  ||||| ||||  ||||| ||| |||| ||||||||  | |||||||||| ||||| |||    
T  16954739 aaaaagcccaaaaccaaaacttgagtcaaagaactgactttcgatctcgaaacaaaagtgatcggtcaaccagactttaggaccaaatcagaagggcacc 16954640  T
Q  196 ccttatcctcag-tccaccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    ||| | |||| | | |||||||| || |||  | |  |||||   ||||||||||||||||||||||   ||||| |||||||||||||||||||||    
T  16954639 cctca-cctctgatacaccagagaaagaccaaatcgcgccaaccaagattgcagctagacaccaactctcgatctggaagcaaaagtaatcggccca 16954544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 9428030 - 9428186
Alignment:
Q  24 agttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacca 123  Q
    ||||||||| |||||| | | |||||| |||||||||||| ||  |||||| ||||||||||||||| ||||||| ||||||| ||| ||||  |||||     
T  9428030 agttgagccactattccatagatcaat-agcttccaccacttcacaacctctggtccaccgaaagaacaccaaaacagcccaagacc-aaactagaaccg 9428127  T
Q  124 aagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaa 182  Q
    ||||||||||| | |||| ||||| ||||| ||| ||  ||||||||| || |||||||    
T  9428128 aagaactgacttctgatctcgaatcaaaagtgatcggctcaccagactacaggaccaaa 9428186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 23983281 - 23983141
Alignment:
Q  95 aaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaac 194  Q
    |||||| |||||||||||| | ||| | || ||| |||||||||||| ||||| |||| |||| |  |||||||||| ||||||||||| | || || ||    
T  23983281 aaaaaaacccaaaaccaaa-cttgagctaaggaattgactcccgatctcgaatcaaaaacgatcgacccaccagacttcaagaccaaattagaa-ggcac 23983184  T
Q  195 cccttatcctcagtccaccagaggaacaccgtagccagccaaa 237  Q
    |||| | |||| |||||||||| ||||||| || |||||||||    
T  23983183 ccctcaccctcggtccaccagaagaacaccataaccagccaaa 23983141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 291
Target Start/End: Original strand, 42533210 - 42533442
Alignment:
Q  57 ccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcg 155  Q
    ||||||||||   ||||| | ||||||||||||| |||| |||||||||||| |  |||| | | |||||| | |||||||||||| ||||| ||||| |    
T  42533210 ccaccacctcacgacctctgatccaccgaaagaa-accataaaaagcccaaacc--aaacttaagccaaaggattgactcccgatctcgaatcaaaagtg 42533306  T
Q  156 ataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagaca 255  Q
    ||  | ||||||||||  | ||||||||||  |||| |||||| | || |  | |||||||| ||||||  | |  ||||||| ||| ||||||| ||||    
T  42533307 atcagcccaccagactttaggaccaaatcaggagggcacccctcacccccgatgcaccagagaaacaccacatcgcgccaaataagaatgcagctggaca 42533406  T
Q  256 ccaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    |  ||| | ||||||||||||||||||| |||||||    
T  42533407 cagactcccgatctcgaagcaaaagtaaccggccca 42533442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 35745965 - 35746018
Alignment:
Q  240 agattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||| ||| |||||    
T  35745965 agattgctgctagtcaccaacttccgatctcgaagcaaaagtaaccggtccacc 35746018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 1820153 - 1820205
Alignment:
Q  250 tagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccag 302  Q
    ||||||| | || ||||||||||||||||| |||||| |||||||||||||||    
T  1820153 tagacactagctcctgatctcgaagcaaaaataatcgccccaccagaatccag 1820205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 16828931 - 16829033
Alignment:
Q  96 aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaacc 195  Q
    |||||||||||||||||||| |||  |||||||||||||  ||||| ||||  ||||| |||  | | ||||||||  | |||||||||| ||||| |||    
T  16828931 aaaaagcccaaaaccaaaacttgagtcaaagaactgactttcgatctcgaaacaaaagtgatcagccaaccagactttaggaccaaatcagaagggcacc 16829030  T
Q  196 cct 198  Q
    |||    
T  16829031 cct 16829033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 5860309 - 5860358
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    ||||||| |||||||||||| ||||| |||||||||||| ||||| ||||    
T  5860309 caaagaattgactcccgatctcgaatcaaaagcgataggcccaccggact 5860358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 26386130 - 26386265
Alignment:
Q  55 ttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagc 154  Q
    ||||||||||||| | | ||||||||| |||||||| ||||||  || || ||| |||||| ||||   ||||||  |||||||||| ||||| ||||||    
T  26386130 ttccaccacctctcatcatccggtccatcgaaagaacaccaaattag-cctaaatcaaaacttgaattgaagaacgaactcccgatctcgaatcaaaagc 26386228  T
Q  155 gataggtccaccagactgcaagaccaaatcataaggg 191  Q
    ||| || |||||  ||| ||| | ||||||| |||||    
T  26386229 gatcggaccaccgaactccaaaatcaaatcagaaggg 26386265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 33435026 - 33434998
Alignment:
Q  265 gatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||||||||||||||||||||||    
T  33435026 gatctcgaagcaaaagtaatcggcccacc 33434998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 303
Target Start/End: Original strand, 943 - 1218
Alignment:
Q  27 tgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaag 126  Q
    |||||| |||||||||| |||||| | |||||||||| ||| || ||||| | || ||| |||| || |||||| | |||||||||||| | ||||||||    
T  943 tgagccactattctaaagatcaatcatcttccaccacttcttaatctccgattcatcgagagaacactaaaaaacctcaaaaccaaaacttaaaccaaag 1042  T
Q  127 aactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgt 226  Q
    ||||||||||||||| ||||| ||||||||| || |||||||||| || |||||||||| ||||| |||||| || | ||||||||||||| ||||||      
T  1043 aactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcatgaccaaatcagaaggg-acccctcattcccagtccaccagagaaacaccaa 1141  T
Q  227 agccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    |  ||  ||||  |||||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||    
T  1142 aatcaatcaaacaagattgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagc 1218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 303
Target Start/End: Original strand, 38544664 - 38544939
Alignment:
Q  27 tgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaag 126  Q
    |||||| |||||||||| |||||| | |||||||||| ||| || ||||| | || ||| |||| || |||||| | |||||||||||| | ||||||||    
T  38544664 tgagccactattctaaagatcaatcatcttccaccacttcttaatctccgattcatcgagagaacactaaaaaacctcaaaaccaaaacttaaaccaaag 38544763  T
Q  127 aactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgt 226  Q
    ||||||||||||||| ||||| ||||||||| || |||||||||| || |||||||||| ||||| |||||| || | ||||||||||||| ||||||      
T  38544764 aactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcatgaccaaatcagaaggg-acccctcattcccagtccaccagagaaacaccaa 38544862  T
Q  227 agccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    |  ||  ||||  |||||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||    
T  38544863 aatcaatcaaacaagattgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagc 38544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 298
Target Start/End: Complemental strand, 42374322 - 42374047
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| |||||||||| |||||| |||||||||||||||| || |||||||   |||||||||  ||||| ||||||||||||||||| ||||||    
T  42374322 aagttgagccactattctaaagatcaatcagcttccaccacctctcaatctccggtatgccgaaagaacgccaaacaagcccaaaaccaaaacttgaacc 42374223  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    |||  |||||||||||||| | ||| ||||||||| ||||||||||||  || |||||||||| ||||| |||||  | |||| || ||||| || ||||    
T  42374222 aaaagactgactcccgatctcaaatcaaaagcgatcggtccaccagacaacatgaccaaatcagaagggcaccccaaaccctcggtacaccaaagaaaca 42374123  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaat 298  Q
      || | ||||||||  |||||||| ||||||||  ||| | ||||||||| ||||||||| ||| ||||||||||    
T  42374122 ttgtcgtcagccaaacaagattgcaactagacactgactcccgatctcgaatcaaaagtaaccggtccaccagaat 42374047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 17033746 - 17033465
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaa-gcccaaaaccaaaacctgaac 121  Q
    ||||||||||  ||||||||| |||||| ||||| || ||||||  |||||| ||  | ||||||||| || |||||| ||||||||||||||| |||||    
T  17033746 aagttgagccattattctaaagatcaatcagcttgcatcacctcataacctcaggatcgccgaaagaacacaaaaaaaagcccaaaaccaaaacttgaac 17033647  T
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaac 221  Q
    |||||||||||||||||||| ||| | ||||| ||| || ||||||||||  | |||||||||| ||||| ||||| ||  ||| || ||||| || | |    
T  17033646 caaagaactgactcccgatctcgattcaaaagtgatcggcccaccagactataggaccaaatcagaagggcaccccctactctcggttcaccatagaatc 17033547  T
Q  222 accgtagccagccaaatcagattgcagctagacaccaacttct-gatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||| ||||||||  |||||||| |||||| |||| |||| ||||||||| ||||||||| |||||||||||||||||||    
T  17033546 accgtagtcagccaaacaagattgcaactagacgccaa-ttctcgatctcgaaacaaaagtaaccggcccaccagaatccagc 17033465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 19598794 - 19598522
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    ||||||||||| ||||||||| |||||| | |||||||||||||  ||||||||| |||||||||||| |||| |||| ||||||| | |||| |||  |    
T  19598794 aagttgagccgttattctaaagatcaatcaacttccaccacctcacaacctccggaccaccgaaagaacaccataaaaacccaaaatc-aaacttgagtc 19598696  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    ||||||||||||| ||||| ||||| ||||||||| || |||||||||| || |||| || || | ||| |||||||| |||| ||||||||||| |       
T  19598695 aaagaactgactctcgatctcgaatcaaaagcgatcggcccaccagacttcaggacccaaccagacgggcaccccttaccctcggtccaccagagaa--- 19598599  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
         | |||||||   | | ||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  19598598 ----tgtcagccaagcaaaaatgcagctagacgccaacttctgatctcgaagcaaaagtaaccggcccaccagagtccagc 19598522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 50589130 - 50589407
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||  |||||| ||| |||||| | |||| ||||||||  |||||| ||||||||||||||| || ||| ||||||||||||||| | ||  ||    
T  50589130 aagttgagctactattccaaagatcaatcaacttctaccacctcacaacctctggtccaccgaaagaacactaaataagcccaaaaccaaa-cttgggcc 50589228  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    ||||||||| ||||||||  ||||| |||||||||  | ||||| |||| || |||| || || | ||| |||||||| || ||||||||||||| |||     
T  50589229 aaagaactggctcccgatttcgaatcaaaagcgatcagcccaccggacttcaggacccaaccagacgggcaccccttacccccagtccaccagagaaac- 50589327  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
     ||||||||||||||  |||  |||||||||| |||| | | ||||||||||||||| ||| |||||||||||||||||||    
T  50589328 -cgtagccagccaaacaagaaagcagctagacgccaagtcccgatctcgaagcaaaattaaccggcccaccagaatccagc 50589407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 231
Target Start/End: Complemental strand, 4651922 - 4651731
Alignment:
Q  38 tctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactccc 137  Q
    |||||| |||| | ||||||||||||| |  |||||||||||||||||| ||| ||||||||||||||||||| ||||  |||||| || ||||||||||    
T  4651922 tctaaagatcattcagcttccaccaccgcgcaacctccggtccaccgaaggaacaccaaaaaagcccaaaacc-aaactagaaccagag-actgactccc 4651825  T
Q  138 gatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagcca 231  Q
    |||| ||||| ||||| ||| || || ||||||| |   || || ||| ||||| |||||||| || | || |||||||| ||||| |||||||    
T  4651824 gatctcgaatcaaaagtgatcggccccccagacttcggaacaaattcagaagggcaccccttacccccggtacaccagagaaacactgtagcca 4651731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 263
Target Start/End: Complemental strand, 27102320 - 27102109
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaa 151  Q
    ||||||||||||||||  ||||||| |||||||||||||  |  ||||||||||||||| |||| ||| ||||||||||||||||||||| ||||| |||    
T  27102320 agcttccaccacctctcgacctccgatccaccgaaagaaaccgtaaaaagcccaaaacc-aaacttgatccaaagaactgactcccgatctcgaatcaaa 27102222  T
Q  152 agcgataggtccaccagactgcaagaccaaatcataaggg-aaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagct 250  Q
    || ||| || ||   |||||   |||||||| || ||||| | ||||| | |||| || |||||||| ||||||  | |  ||||||| ||||||||||     
T  27102221 agtgatcggcccgttagactttgagaccaaaacagaagggcaccccctcaccctcggtacaccagagaaacaccaaatcacgccaaataagattgcagcc 27102122  T
Q  251 agacaccaacttc 263  Q
    ||||||| |||||    
T  27102121 agacaccgacttc 27102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 6583161 - 6583313
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcac 143  Q
    |||||| ||||||||||||||||  ||||||| | ||||||||||| |||| |||||||  ||||||||||| ||| |||||||| ||||| |||||| |    
T  6583161 atcaatcagcttccaccacctctcgacctccgattcaccgaaagaa-accataaaaagcaaaaaaccaaaac-tgatccaaagaattgactgccgatctc 6583258  T
Q  144 gaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaacccct 198  Q
    |||| ||||| ||| |||||||||||||  | |||||||||| || || ||||||    
T  6583259 gaatcaaaagtgatcggtccaccagactttaggaccaaatcagaaaggcacccct 6583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 293
Target Start/End: Original strand, 32864557 - 32864754
Alignment:
Q  96 aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaacc 195  Q
    |||||||||||||||||| | |||  |||||||| |||| |||||| ||||||||||| ||| || ||||||| ||  | |||||||||  ||||| |||    
T  32864557 aaaaagcccaaaaccaaa-cttgagtcaaagaaccgacttccgatctcgaattaaaagtgattggcccaccagcctttaggaccaaatcggaagggcacc 32864655  T
Q  196 ccttatcctcagtccaccagaggaacaccgtagccagccaaatca-gattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    ||| | |||||||  | ||||  ||||||  |   ||||||| || ||||| ||||||||||| ||| ||||| ||||||||||||||| |||||||||    
T  32864656 cctcaccctcagtagatcagataaacaccaaataaagccaaaacaagattgtagctagacaccgactcctgatttcgaagcaaaagtaaccggcccacc 32864754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 303
Target Start/End: Complemental strand, 24659059 - 24658809
Alignment:
Q  53 gcttccaccacctctgaacctccggtccaccgaaagaataccaaa--aaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    |||||||| ||||||  ||||||| ||||||||||||  || |||  ||||||||||| | || | | | ||||||| ||||||||||||| ||||| ||    
T  24659059 gcttccacaacctctcgacctccgatccaccgaaagagcacaaaaccaaagcccaaaaaccaa-cttcagccaaagagctgactcccgatctcgaatcaa 24658961  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagct 250  Q
    ||| ||| || ||||||||||  |  |||||||||  |||| |||||||  || |  | |||||||| |||||| || | || ||||   ||||||||||    
T  24658960 aagtgattggcccaccagactttagaaccaaatcagcagggcaccccttgcccccgatacaccagag-aacaccatatcaagtcaaacatgattgcagct 24658862  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||||| | ||||| ||||||||| ||| ||||||||| || ||||||    
T  24658861 agacaccaactcccgatcttgaagcaaaaataaccggcccaccggactccagc 24658809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 27905536 - 27905423
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaa 151  Q
    |||||||||||||||| ||||||||||||||||||  || |||   | ||||||||| |||||| |||| ||||||||| ||| | |||| ||||| |||    
T  27905536 agcttccaccacctctcaacctccggtccaccgaa--aacacc---atagcccaaaa-caaaacatgaatcaaagaactaacttctgatctcgaatcaaa 27905443  T
Q  152 agcgataggtccaccagact 171  Q
    || ||| |||||||||||||    
T  27905442 agtgatcggtccaccagact 27905423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 46603529 - 46603389
Alignment:
Q  36 attctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactc 135  Q
    |||||| | |||||| | || ||||||||||| |||||||||||| |||||| ||||||         ||||| |||||  |||||||||||||||||||    
T  46603529 attctacagatcaatcaactcccaccacctctcaacctccggtccgccgaaaaaatacc---------caaaatcaaaaattgaaccaaagaactgactc 46603439  T
Q  136 ccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatca 185  Q
     ||||| ||||| ||||||||  || |||||||||| || |||| |||||    
T  46603438 tcgatctcgaatcaaaagcgaatggcccaccagactacatgacctaatca 46603389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 34775007 - 34774862
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaacc-aaagaactgactcccgatca 142  Q
    |||||| |||||||||||||||| |||||||  | ||||||||||| |||| ||||||||||||| | |||| ||| || ||| |||||||||||||||     
T  34775007 atcaatcagcttccaccacctctcaacctccaattcaccgaaagaa-accataaaaagcccaaaa-ctaaacttgagccaaaaaaactgactcccgatct 34774910  T
Q  143 cgaattaaaagcgataggtccaccagactgcaagaccaaatcataaggg 191  Q
    || || ||||| ||| ||||||||||||   | |||||||||| |||||    
T  34774909 cg-atcaaaagtgatcggtccaccagacgttaggaccaaatcagaaggg 34774862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 6583333 - 6583383
Alignment:
Q  243 ttgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    ||||||||||||||| ||| | ||||||||||||||||||| |||||||||    
T  6583333 ttgcagctagacaccgactcccgatctcgaagcaaaagtaaccggcccacc 6583383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 7857594 - 7857544
Alignment:
Q  242 attgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccac 292  Q
    |||||| ||||||||||||| | ||||||||||||||| ||||||||||||    
T  7857594 attgcaactagacaccaactcccgatctcgaagcaaaaataatcggcccac 7857544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 282
Target Start/End: Original strand, 9313309 - 9313470
Alignment:
Q  121 ccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaa 220  Q
    ||||||||||||||||||||| ||||| ||||| |||  | |||| |||||  | |||||||||| ||||| |||||| |  | |  | ||| |||| ||    
T  9313309 ccaaagaactgactcccgatctcgaatcaaaagtgatcagcccactagactttaggaccaaatcagaagggcacccctcacgcccgatacacgagagaaa 9313408  T
Q  221 caccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagta 282  Q
    ||||  | |  | ||||  | |||||||||||||||||||| | ||||||||||||||||||    
T  9313409 caccaaatcacggcaaacaaaattgcagctagacaccaactcccgatctcgaagcaaaagta 9313470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 294
Target Start/End: Original strand, 31585781 - 31585954
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaac 221  Q
    |||||||||||||||||||| ||||| ||||| ||| || ||||||||||  |  ||||||| |  |||| |||||| | ||||||| |||||||| ||     
T  31585781 caaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactatagtaccaaattagcagggcacccctcaccctcagtacaccagagaaaa 31585880  T
Q  222 accgtagccagccaaa-tcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacca 294  Q
    |||  | | || ||||   ||||||||||||||| || ||| | ||||||||||| |||  || ||||||||||    
T  31585881 accaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcccacca 31585954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 31290973 - 31291031
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaa 112  Q
    ||||||||||||||  ||||||| ||||||||||||| |||| |||||||||||||||||    
T  31290973 cttccaccacctctcgacctccgatccaccgaaagaa-accataaaaagcccaaaaccaa 31291031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 10785412 - 10785504
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaa 146  Q
    |||||||||||||||   |||||||  ||||||||| ||| |  |||||||||||||||||| | ||| ||||| ||||||||||||||| ||||    
T  10785412 agcttccaccacctcgcgacctccgaaccaccgaaaaaat-cataaaaagcccaaaaccaaa-cttgagccaaacaactgactcccgatctcgaa 10785504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 41920512 - 41920462
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagactg 172  Q
    |||||||||||||||||||| ||||| ||||| ||| || |||||||||||    
T  41920512 caaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactg 41920462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 291
Target Start/End: Original strand, 46814495 - 46814656
Alignment:
Q  129 ctgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtag 228  Q
    ||||||||||||| ||||| ||||| ||| || ||||||||||  |  |||||||||  |||| |||||||  || | || ||||||| ||||||| ||     
T  46814495 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcaccccttgcccccggtacaccaga-gaacaccatat 46814593  T
Q  229 ccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    | || ||||   ||||||| |||||||||||||   ||||||||| ||||| ||| |||||||    
T  46814594 caagtcaaacaggattgcaactagacaccaactctcgatctcgaatcaaaaataaccggccca 46814656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 52278436 - 52278387
Alignment:
Q  244 tgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    ||||||||||||||  || ||| ||||||||||||||||||||| |||||    
T  52278436 tgcagctagacaccggctcctggtctcgaagcaaaagtaatcggtccacc 52278387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 27032003 - 27032050
Alignment:
Q  241 gattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcc 289  Q
    |||||||| ||||||| |||||| ||||||||||||||| |||||||||    
T  27032003 gattgcaggtagacac-aacttccgatctcgaagcaaaaataatcggcc 27032050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 303
Target Start/End: Original strand, 17720632 - 17720906
Alignment:
Q  26 ttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaa 125  Q
    ||||||| |||||||||| |||||| | |||||||||||||| ||||||  |||||||||||||| ||||||| ||||||||||| |||  |||||||||    
T  17720632 ttgagccactattctaaagatcaatcaacttccaccacctctcaacctcaagtccaccgaaagaacaccaaaacagcccaaaacctaaa-ttgaaccaaa 17720730  T
Q  126 gaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccg 225  Q
    |||||||||||||||| ||||| |||||||||  | |||||| |||  | ||||||| || |  || |||||||| ||   |||||||||||||||| ||    
T  17720731 gaactgactcccgatc-cgaatcaaaagcgatcagcccaccatactttaggaccaaaccagacaggcaccccttacccctggtccaccagaggaaca-cg 17720828  T
Q  226 tagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
     |||||||||||  ||| |||||||| || ||||||   |||||| ||||||||||||||||||||||||||||||||    
T  17720829 gagccagccaaacaagaatgcagctatacgccaactctcgatctcaaagcaaaagtaatcggcccaccagaatccagc 17720906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 30236064 - 30236264
Alignment:
Q  37 ttctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaa-gcccaaaaccaaaacctgaaccaaagaactgactc 135  Q
    ||||||| |||||| ||||||||||||  |  || ||| |||||||||| | || ||||||||| ||||||||||||| | |||||||||||||||||||    
T  30236064 ttctaaagatcaatcagcttccaccactgcgcaatctctggtccaccgatacaacaccaaaaaaagcccaaaaccaaa-cttgaaccaaagaactgactc 30236162  T
Q  136 ccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagcca 235  Q
    |||||| ||||| ||||||||| |  |||||||||| ||| ||||||||| ||||| |||||||| || | ||||||||||| ||||||||||||| |||    
T  30236163 ccgatctcgaatcaaaagcgatcgtcccaccagacttcaaaaccaaatcagaagggcaccccttacccccggtccaccagagaaacaccgtagccaacca 30236262  T
Q  236 aa 237  Q
    ||    
T  30236263 aa 30236264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 301
Target Start/End: Complemental strand, 15906845 - 15906567
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaat-accaaaaaagcccaaaaccaaaacctgaac 121  Q
    |||||||||  |||||||| | |||||| | |||||||||||||| |||||| ||||||| |||||||  || |||  |||||||||||||| | |||||    
T  15906845 aagttgagctactattctataaatcaatcatcttccaccacctcttaacctctggtccactgaaagaaacactaaatcagcccaaaaccaaa-cttgaac 15906747  T
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaac 221  Q
    |||||||||||||||||||| ||||| ||| | ||| || |||||||||| || ||||||| || | ||| |||| | | || ||||||||| ||| |||    
T  15906746 caaagaactgactcccgatctcgaatcaaatgtgatcggcccaccagacttcaggaccaaaccaaacgggcacccttaacccccagtccacccgagaaac 15906647  T
Q  222 accgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    ||| ||||| |||  |  |||  |||| |||||||||||| | ||||||||| ||||||| | |||| | ||||||||||    
T  15906646 accatagcccgccggacaagaaagcagttagacaccaactcccgatctcgaaacaaaagttaccggctcgccagaatcca 15906567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 291
Target Start/End: Original strand, 17656954 - 17657191
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    |||||||||||||| |  ||||||| ||||||||||||| |||| |||||| |||||||| |||| ||| ||||||||||||||||||||| ||||| ||    
T  17656954 agcttccaccacctatcgacctccgatccaccgaaagaa-accataaaaagtccaaaacc-aaacttgagccaaagaactgactcccgatctcgaatcaa 17657051  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagct 250  Q
    ||| ||| |  |||||| |||  | | |||| | | ||||| |||||| |||| | || || ||||| ||||||  | |  ||||||| |||||| ||||    
T  17657052 aagtgatcgacccaccatactttaggtccaacttagaagggcacccctcatcc-cggtacatcagagaaacaccaaatcacgccaaataagattgtagct 17657150  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    || |||| ||| | ||||||||||||||| ||| |||||||    
T  17657151 agccaccgactcccgatctcgaagcaaaattaaccggccca 17657191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 293
Target Start/End: Original strand, 10248498 - 10248745
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaa-aaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcac 143  Q
    |||||| |||||||||||||||    |||||| |||||| |||||| |||| | |||||  ||||||||| | ||| |||||||||||||||||||||      
T  10248498 atcaatcagcttccaccacctcgcggcctccgatccaccaaaagaa-accatataaagcaaaaaaccaaa-cttgagccaaagaactgactcccgatctt 10248595  T
Q  144 gaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagat 243  Q
    |||| ||||| ||| ||||||||| | |  | ||| |||| | ||||  |||||| | || | || |||||||| ||||||  | | |||||||  | ||    
T  10248596 gaatcaaaagtgatcggtccaccaaattttaggacaaaattagaaggacacccctcacccccggtacaccagagaaacaccaaatcaagccaaacaaaat 10248695  T
Q  244 tgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||||||| ||| | |||||||||||||||||||  ||||||||    
T  10248696 tgcagctagacaccgactcccgatctcgaagcaaaagtaactggcccacc 10248745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 32945673 - 32945755
Alignment:
Q  70 acctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaag 153  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||| |||| ||||||| |||||||||||| ||||| |||||    
T  32945673 acctccagtccaccgaaagaacatcaaaaaagcccaaaacc-aaacttgaatcaaagaattgactcccgatctcgaatcaaaag 32945755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 15821400 - 15821573
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaac 221  Q
    |||||| ||||||||||||| ||||| ||||| |||  | ||||||||||  |  |||||||||  |||| ||||||   |||| || |||||||| |||    
T  15821400 caaagagctgactcccgatctcgaatcaaaagtgatcagcccaccagactttagaaccaaatcagcagggcacccctcgccctcggtacaccagag-aac 15821498  T
Q  222 accgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccaga 296  Q
    ||| || | |||||||   ||||| |||||| |||||||||| |||||| ||| |||| ||||||||||||||||    
T  15821499 accatatcaagccaaacaggattgtagctaggcaccaacttccgatctcaaagaaaaaataatcggcccaccaga 15821573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 279
Target Start/End: Complemental strand, 35062584 - 35062360
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaag 153  Q
    ||||||||||| |  |||||| | ||||||||| ||| ||| ||||||||||||||| ||||  |||| | ||||||||||| ||||| ||||| ||||     
T  35062584 cttccaccaccgcgcaacctctgatccaccgaaggaacacctaaaaagcccaaaacc-aaactagaacaagagaactgactctcgatctcgaatcaaaat 35062486  T
Q  154 cgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctaga 253  Q
    |||| || |||||||||| ||  ||||||||| |  || |||||||| ||||  ||   ||| | ||||| ||||||| |||||  | | |||  |||||    
T  35062485 cgatcggcccaccagacttcagaaccaaatcagagaggcaccccttaccctcgatctttcagtgaaacactgtagccaaccaaacaataatgcctctaga 35062386  T
Q  254 caccaacttctgatctcgaagcaaaa 279  Q
    | |||||| | |||||||||||||||    
T  35062385 cgccaactcccgatctcgaagcaaaa 35062360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 41791205 - 41791320
Alignment:
Q  41 aaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgat 140  Q
    ||||||||||  |||||||||||| |  ||||||  ||||| ||||| || |||||||||| ||||||| ||| | |||||||||||| |||||| ||||    
T  41791205 aaatatcaatccgcttccaccaccgcgcaacctctagtccatcgaaataacaccaaaaaagtccaaaactaaa-cttgaaccaaagaagtgactctcgat 41791303  T
Q  141 cacgaattaaaagcgat 157  Q
    | ||||| |||||||||    
T  41791304 ctcgaatcaaaagcgat 41791320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 10552410 - 10552265
Alignment:
Q  38 tctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactccc 137  Q
    |||||| |||| | ||||||||||||  |  |||||| ||||| |||||  || ||| ||||||| |||||||||| |  |||||| |||||||||||||    
T  10552410 tctaaagatcattcagcttccaccacaacgcaacctc-ggtcccccgaagtaacacctaaaaagcacaaaaccaaa-ctagaaccagagaactgactccc 10552313  T
Q  138 gatcacgaattaaaagcgataggtccaccagactgcaagaccaaatca 185  Q
    ||||  |||| ||||||||| || |||||||||| ||  |||||||||    
T  10552312 gatctagaatcaaaagcgatcggcccaccagacttcagaaccaaatca 10552265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 12198022 - 12198151
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaaaaaa-gcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    |||||| |||||||  ||||||| ||||  ||||||| | ||||||| || |||||||||| | ||| ||||||||||||||||| ||    ||||||||    
T  12198022 cttccatcacctctcgacctccgatccattgaaagaacatcaaaaaaagctcaaaaccaaa-cttgagccaaagaactgactcccaattttcaattaaaa 12198120  T
Q  153 gcgataggtccaccagactgcaagaccaaat 183  Q
    | ||| ||||||||||||| || ||||||||    
T  12198121 gtgatcggtccaccagacttcatgaccaaat 12198151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 12442450 - 12442579
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaaaaaa-gcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    |||||| |||||||  ||||||| ||||  ||||||| | ||||||| || |||||||||| | ||| ||||||||||||||||| ||    ||||||||    
T  12442450 cttccatcacctctcgacctccgatccattgaaagaacatcaaaaaaagctcaaaaccaaa-cttgagccaaagaactgactcccaattttcaattaaaa 12442548  T
Q  153 gcgataggtccaccagactgcaagaccaaat 183  Q
    | ||| ||||||||||||| || ||||||||    
T  12442549 gtgatcggtccaccagacttcatgaccaaat 12442579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 18690404 - 18690314
Alignment:
Q  210 caccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagc-aaaagtaatcggcccaccagaatc 299  Q
    |||||||| |||||  ||| ||||||||  |||||||| ||| ||||||||| |  |||||||| | ||||||||| ||||||||||||||    
T  18690404 caccagagaaacactatagtcagccaaacaagattgcaactaaacaccaactccctatctcgaaaccaaaagtaattggcccaccagaatc 18690314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 24995416 - 24995465
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||||||||||||| ||||| ||||| ||| || ||||||||||    
T  24995416 caaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 24995465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 31207383 - 31207432
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||||||||||||| ||||| ||||| ||| || ||||||||||    
T  31207383 caaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 31207432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 36630897 - 36630848
Alignment:
Q  122 caaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||||| ||||||| ||||||||||| ||| || ||||||||||    
T  36630897 caaagaactgacacccgatctcgaattaaaagtgatcggcccaccagact 36630848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 5221987 - 5222039
Alignment:
Q  250 tagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccag 302  Q
    ||||||| |||||| ||||||||||| |||  ||||||||||| |||||||||    
T  5221987 tagacactaacttccgatctcgaagcgaaatcaatcggcccactagaatccag 5222039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 52 - 303
Target Start/End: Original strand, 32935291 - 32935541
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaa 151  Q
    |||||||||||||||  |||||  |  |||||||||||| || ||||||| |||||| |||| | |||  | |||||||||||||||||| ||||| |||    
T  32935291 agcttccaccacctcccaacctttgaaccaccgaaagaacactaaaaaagtccaaaatcaaa-cttgagtccaagaactgactcccgatctcgaatcaaa 32935389  T
Q  152 agcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagcta 251  Q
    |||||| || |||||||||| || |||||||||| |||||||||||| | || |  |||| || || |||||| || | |||||||  ||||||||||||    
T  32935390 agcgatcggcccaccagacttcaggaccaaatcagaagggaacccctcacccccgatccatcatagaaacaccataacaagccaaagaagattgcagcta 32935489  T
Q  252 gacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||||||||||||| |||||||||||| || |||||| |||||||||    
T  32935490 gacaccaacttctgatctcaaagcaaaagtaaccgacccaccggaatccagc 32935541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 33968538 - 33968815
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| |||||||||| |||||| ||||||||||| |||| ||||| ||||||  | ||||||   |||||||  |||||| |||||| ||||||    
T  33968538 aagttgagccactattctaaagatcaatcagcttccaccatctctcaaccttcggtccgtcaaaagaa---caaaaaaatccaaaatcaaaacttgaacc 33968634  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaaca 222  Q
    ||||||||||||||||||| ||||| |||||||||    |||| ||||| ||  ||||||||| ||||  ||||| || |||| || |||||||| ||||    
T  33968635 aaagaactgactcccgatctcgaatcaaaagcgatctacccactagactacataaccaaatcagaaggccaccccataccctcggttcaccagagaaaca 33968734  T
Q  223 ccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||| |||||  ||| | ||| ||||| |||||||| ||||||| ||||||||||| || ||||||| ||| ||||    
T  33968735 ccgtagccaaccaaacaagaatacagttagacgccaacttccgatctcggagcaaaagtaaccgacccaccaaaattcagc 33968815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 301
Target Start/End: Complemental strand, 9224186 - 9223923
Alignment:
Q  37 ttctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaa-aaaagcccaaaaccaaaacctgaaccaaagaactgactc 135  Q
    ||||||| |||| | ||||||||||||| |  |||||||||| ||||||||||  ||||| ||||||||||||||||||| |||||||||||||||||||    
T  9224186 ttctaaagatcattcagcttccaccaccgcacaacctccggtgcaccgaaagagcaccaataaaagcccaaaaccaaaac-tgaaccaaagaactgactc 9224088  T
Q  136 ccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagcca 235  Q
    |||||| ||||| |||||||||  | ||||||||||  | |||||| | | ||||| | |||| | || | |||||||| |||||||||  || | | ||    
T  9224087 ccgatctcgaatcaaaagcgatcagcccaccagactttaggaccaacttaaaagggca-ccctcacccccggtccaccaaaggaacaccaaagtcggtca 9223989  T
Q  236 aatc-agattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatcca 301  Q
    || | |||||||||  ||||||||||| | ||||||||||||||| ||| ||||||||||| |||||    
T  9223988 aaacaagattgcagaaagacaccaactcccgatctcgaagcaaaa-taaccggcccaccagcatcca 9223923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 26215964 - 26216089
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacg 144  Q
    |||||| ||||||||||||| |  || |||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| ||    
T  26215964 atcaatcagcttccaccaccgcgcaatctccggtccaccaaaagaacaccaaaaaagcccaaaaccaaaa-ctgaaccgaagaactgactcccgatctcg 26216062  T
Q  145 aattaaaagcgataggtccaccagact 171  Q
    ||| ||||| ||| || ||||||||||    
T  26216063 aatcaaaagtgatcggcccaccagact 26216089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 26534652 - 26534808
Alignment:
Q  37 ttctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaatacc-aaaaaagcccaaaaccaaaacctgaacca---aagaactga 132  Q
    ||||||| |||||| ||||||||||||| |  ||||| |||||||||||||||| ||| |||||||||||||||| |||| |||||||   |||||||||    
T  26534652 ttctaaagatcaatcagcttccaccaccgcacaaccttcggtccaccgaaagaacacctaaaaaagcccaaaacc-aaacttgaaccaaagaagaactga 26534750  T
Q  133 ctcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagg 190  Q
    ||||| ||| ||||| ||||| ||| || |||||||||| || |||||||||| ||||    
T  26534751 ctcccaatctcgaatcaaaagtgatcggcccaccagacttcaggaccaaatcagaagg 26534808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 21266249 - 21266105
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacg 144  Q
    |||||||||| ||||||||| |  || ||| |||||||| |||||| ||||| ||||||||||||| |||| ||||||| | |||| |||||||||| ||    
T  21266249 atcaattagcctccaccaccgcacaatctctggtccaccaaaagaacaccaacaaagcccaaaacc-aaacttgaaccacataactaactcccgatctcg 21266151  T
Q  145 aattaaaagcgataggtccaccagactgcaagaccaaatcataagg 190  Q
    ||| ||||||||| || ||||||| ||  | |||||||||||||||    
T  21266150 aatcaaaagcgatcggcccaccagtctttaggaccaaatcataagg 21266105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 291
Target Start/End: Original strand, 20701755 - 20701993
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||||| ||||||  ||||||| ||||||||||||| |||| ||||||||||||||| |||| | | |||||||||| |||||||||| ||||| ||    
T  20701755 agcttccactacctctcgacctccgatccaccgaaagaa-accataaaaagcccaaaacc-aaacttaagccaaagaactaactcccgatctcgaatcaa 20701852  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagct 250  Q
    ||| ||| ||  |||||| ||  | |||||||||| ||||| |||||| | || | || |||||||| || |||  | |  ||||||  |  ||||||||    
T  20701853 aagtgatcggcacaccagtctaaatgaccaaatcagaagggcacccctcacccccggtacaccagagaaaaaccaaatcacgccaaacaaatttgcagct 20701952  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    ||||||| | | | |||||| |||||||||||| |||||||    
T  20701953 agacaccgaatcccgatctcaaagcaaaagtaaccggccca 20701993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 295
Target Start/End: Complemental strand, 21265095 - 21264876
Alignment:
Q  72 ctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagact 171  Q
    |||||||||| | |||||| ||||| |||||||||||||||| | ||||||| | |||| |||||||||| ||||| |||||| || || |||| || ||    
T  21265095 ctccggtccatcaaaagaacaccaacaaagcccaaaaccaaa-cttgaaccagataactaactcccgatctcgaatcaaaagctatcggcccactagtct 21264997  T
Q  172 gcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcg 271  Q
     || |||||||||||||||   | ||| | |||| ||  || |||| ||||||  |||||| |||| || |||||||  |||||||| || |  ||||||    
T  21264996 tcaggaccaaatcataagg--ccacctcaccctcggtttactagagaaacaccaaagccagtcaaaacaaattgcagaaagacaccagctccctatctcg 21264899  T
Q  272 aagcaaaagtaatcggcccaccag 295  Q
    |||||||| ||| |||||||||||    
T  21264898 aagcaaaa-taaccggcccaccag 21264876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 13098498 - 13098607
Alignment:
Q  27 tgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaaccaaag 126  Q
    |||||| |||||||||| |||||| | |||||||| || |  ||||||| | |||||||||||| || ||||||||| |||||| |||| ||| ||||||    
T  13098498 tgagccactattctaaagatcaatcatcttccacctccacacaacctccagaccaccgaaagaacacaaaaaaagccaaaaacc-aaacttgagccaaag 13098596  T
Q  127 aactgactccc 137  Q
    |||| ||||||    
T  13098597 aactaactccc 13098607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 13423602 - 13423482
Alignment:
Q  45 atcaattagcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcac 143  Q
    |||||| |||||||||||||||    ||||||||||| |||||||| |||| | |||||||| |||| |||| ||| ||||||||| ||||| ||||| |    
T  13423602 atcaatcagcttccaccacctcgcggcctccggtccatcgaaagaa-accatataaagcccataacc-aaacttgagccaaagaaccgactctcgatctc 13423505  T
Q  144 gaattaaaagcgataggtccacc 166  Q
    |||| ||||| ||| ||||||||    
T  13423504 gaatcaaaagtgatcggtccacc 13423482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 15132662 - 15132714
Alignment:
Q  241 gattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    |||||||||||| |||| ||| | ||||||||||||||||||| |||||||||    
T  15132662 gattgcagctagtcaccgactcccgatctcgaagcaaaagtaaccggcccacc 15132714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 13098706 - 13098765
Alignment:
Q  244 tgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||||| |||||| |  |||||||||||||||||| ||||||| |||||| ||||    
T  13098706 tgcagctagacgccaactcccaatctcgaagcaaaagtaaccggcccatcagaatgcagc 13098765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 16510441 - 16510492
Alignment:
Q  240 agattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggccca 291  Q
    ||||||||||||||| || ||| | ||||||||||||||||||| |||||||    
T  16510441 agattgcagctagaccccgactcccgatctcgaagcaaaagtaaccggccca 16510492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 303
Target Start/End: Original strand, 3880625 - 3880785
Alignment:
Q  143 cgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcaga 242  Q
    ||||| ||||| ||| || |||||| |||  | |||||||||| ||||| ||| || | |||| ||  ||||||| ||||||  | |  ||||||  |||    
T  3880625 cgaatcaaaagtgatcggcccaccaaactttaggaccaaatcagaagggcacctctcaccctcggtaaaccagagaaacaccaaatcatgccaaacaaga 3880724  T
Q  243 ttgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    | ||||||||||||| ||| | |||||| ||||||||||||  |||||||| ||| |||||    
T  3880725 tagcagctagacaccgactcccgatctcaaagcaaaagtaactggcccaccggaaaccagc 3880785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 293
Target Start/End: Complemental strand, 36836 - 36596
Alignment:
Q  54 cttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacct-gaaccaaagaactgactcccgatcacgaattaaaa 152  Q
    |||||||||| |||  ||||||| |||||||||||||  |  |||||| ||||||||||||  | ||  |||||||||||||||||||| ||||| ||||    
T  36836 cttccaccacatctcgacctccgatccaccgaaagaaatcataaaaagaccaaaaccaaaaagttgagacaaagaactgactcccgatctcgaatcaaaa 36737  T
Q  153 gcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagctag 252  Q
    | |||  | || |||||||  | |||||||||| ||||| |||||| |  ||| || |||||||| ||||||  | |  ||||||  | |||||||||||    
T  36736 gtgatcagcccgccagactttaggaccaaatcagaagggcacccctcactctcggtacaccagagaaacaccaaatcacgccaaacaaaattgcagctag 36637  T
Q  253 acaccaacttctgatctcgaagcaaaagtaatcggcccacc 293  Q
    ||||| ||| ||||||||||| ||||| |||||||||||||    
T  36636 acaccgactcctgatctcgaatcaaaattaatcggcccacc 36596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 19512 - 19367
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||||||| ||||  ||||||| ||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||||| |||||| ||||| ||    
T  19512 agcttccaccaactctcgacctccgatccaccgaaagaa-accataaaaagcccaaaaccaaa-cttgagccaaagaactgacttccgatctcgaatcaa 19415  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaacccct 198  Q
    ||| ||| || ||||||||||  | |||||||||| ||||| ||||||    
T  19414 aagtgatcggcccaccagactttaggaccaaatcagaagggcacccct 19367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 42090 - 42235
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    ||||||||||| ||||  ||||||| ||||| ||||||| |||| ||||| |||||||||||| | ||| |||||||||||||| |||||| ||||| ||    
T  42090 agcttccaccaactctcgacctccgatccactgaaagaa-accataaaaatcccaaaaccaaa-cttgagccaaagaactgacttccgatctcgaatcaa 42187  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaacccct 198  Q
    ||| ||| || ||||||||||  | ||| |||||| ||||| ||||||    
T  42188 aagtgatcggcccaccagactttaggactaaatcagaagggcacccct 42235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 59591 - 59502
Alignment:
Q  210 caccagaggaacaccgtagccagccaaatcagattgcagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatc 299  Q
    |||||||| |||||  ||| ||||||||  |||||||| ||| ||||||||| | |||||| ||||||||||||| ||||||||||||||    
T  59591 caccagagaaacactatagtcagccaaacaagattgcaactaaacaccaactcccgatctcaaagcaaaagtaattggcccaccagaatc 59502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 303
Target Start/End: Complemental strand, 47158 - 46970
Alignment:
Q  117 tgaaccaaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccaga 216  Q
    ||||| |||||||||| |  ||||| ||||| ||||| ||| ||| ||||||||  || |  | ||||| ||||| |||||| | || | || |||||||    
T  47158 tgaactaaagaactgatttacgatctcgaatcaaaagtgattggttcaccagacatcagggtctaatcagaagggcacccctcacccccggttcaccaga 47059  T
Q  217 ggaacaccgtagccagccaaatcagattgcag--ctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    | |||||  ||| ||||||||  ||||||||   |||||||||||||    |||||||| ||||||||| ||| |||||||||||||||    
T  47058 gaaacactatagtcagccaaacaagattgcaattctagacaccaactcactatctcgaaccaaaagtaaccggtccaccagaatccagc 46970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 71660 - 71606
Alignment:
Q  249 ctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagc 303  Q
    ||||||||||||| |  |||||||| ||||||||| ||| |||||||||||||||    
T  71660 ctagacaccaactccctatctcgaaccaaaagtaaccggtccaccagaatccagc 71606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 289
Target Start/End: Complemental strand, 58256 - 58020
Alignment:
Q  52 agcttccaccacctctgaacctccggtccaccgaaagaatacca-aaaaagcccaaaaccaaaacctgaaccaaagaactgactcccgatcacgaattaa 150  Q
    |||||||| || ||||  ||||||| ||||||||||||| |||| |||||||| ||||||||| | ||| ||||| || ||||| ||||||  |||| ||    
T  58256 agcttccatcatctctcgacctccgatccaccgaaagaa-accataaaaagcctaaaaccaaa-cttgatccaaacaattgacttccgatcttgaatcaa 58159  T
Q  151 aagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccagaggaacaccgtagccagccaaatcagattgcagct 250  Q
    ||| ||| || |||||| |||  | |||||||||  ||||| |||    | |||  || |||||||| ||||||  | |  ||||||  |||||||||||    
T  58158 aagtgatcggcccaccaaactttaggaccaaatctgaagggcaccatacaccctaggtacaccagagaaacaccaaatcacgccaaacaagattgcagct 58059  T
Q  251 agacaccaacttctgatctcgaagcaaaagtaatcggcc 289  Q
    ||||| | ||| | ||||||||||||||||||| |||||    
T  58058 agacaacgactcccgatctcgaagcaaaagtaaccggcc 58020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 6716 - 6525
Alignment:
Q  23 aagttgagccgctattctaaatatcaattagcttccaccacctctgaacctccggtccaccgaaagaataccaaaaaagcccaaaaccaaaacctgaacc 122  Q
    |||||||||| |||||||||| | |||| | |||||||| || |  ||||||  | |||||||||||| || ||||||||| |||||| |||| ||| ||    
T  6716 aagttgagccactattctaaagaccaatcatcttccacctccacacaacctctagaccaccgaaagaacacaaaaaaagccaaaaacc-aaacttgagcc 6618  T
Q  123 aaagaactgactcccgatcacgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggaaccccttatcctcagtccaccaga 216  Q
    |||||||| ||| || |||  |||| ||||| ||| | | ||||||||| || |||  || || | ||| |||||||| |||| ||||||||||    
T  6617 aaagaactaactaccaatcttgaatcaaaagagatcgttgcaccagacttcaggactcaaccagatgggcacccctta-cctcggtccaccaga 6525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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