View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2518_low_8 (Length: 293)
Name: NF2518_low_8
Description: NF2518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2518_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 42685806 - 42686076
Alignment:
| Q |
1 |
gtttattctgtactcttatccaatctatttatttttgtgaaacacatgttttatgccttgnnnnnnnnnccttctgtggcaggcattggttataatggat |
100 |
Q |
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| T |
42685806 |
gtttattctgtactcttatccaatctatttatttttgtgaaacacatgttttatgccttgtttttttttccttctgtggcaggcattggttataatggat |
42685905 |
T |
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| Q |
101 |
ttccaagaggttgttctgatgacaagctaccatgggccaagttaagtgtttaaggcaggagtttgagttatttttcttttgctatcatttaaaatttctc |
200 |
Q |
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| T |
42685906 |
ttccaagaggttgttctgatgacaagctaccatgggccaaggtaagtgtttaaggcaggagtttgagttatttttcttttgctatcatttaaaatttctc |
42686005 |
T |
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| Q |
201 |
attgattgataaatctatttatatgtttcagaaatctaggaccgggaatcctttggagaccaagtacccgt |
271 |
Q |
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| T |
42686006 |
attgattgataaatctatttatatgtttcagaaatctaggaccgggaatcctttggagaccaagtacccgt |
42686076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 21185728 - 21185787
Alignment:
| Q |
82 |
ggcattggttataatggatttccaagaggttgttctgatgacaagctaccatgggccaag |
141 |
Q |
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| T |
21185728 |
ggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaag |
21185787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 27119326 - 27119385
Alignment:
| Q |
82 |
ggcattggttataatggatttccaagaggttgttctgatgacaagctaccatgggccaag |
141 |
Q |
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| T |
27119326 |
ggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaag |
27119385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 27119384 - 27119423
Alignment:
| Q |
230 |
agaaatctaggaccgggaatcctttggagaccaagtaccc |
269 |
Q |
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| T |
27119384 |
agaaatctaggactgggaatcctttggagactaagtaccc |
27119423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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