View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_1 (Length: 1057)
Name: NF2519_high_1
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Complemental strand, 2214354 - 2213878
Alignment:
| Q |
10 |
catcatcaatgataattcctattccaaatcttctacctccatcactatgttagcgagaaatctccttcgtgagatcgcgcgatcgatataggaaattttg |
109 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2214354 |
catcatcaatgataattcctattccaaatcttgtacctccatcactatgttagcgaggaatctccttcgtgagattgcgcgatcgatataggaaattttg |
2214255 |
T |
|
| Q |
110 |
tagaggatttgtcatcagagatcagaactaacgaccagctagaatggagnnnnnnncaagtccagattctcattctcatcaaaccttgattgtaatcaca |
209 |
Q |
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| T |
2214254 |
tagaggatttgtcatcagagatcagaactaacgaccagctagaatggagaaaaaa-caagtccagattctcattctcatcacaccttgattgtaatcaca |
2214156 |
T |
|
| Q |
210 |
acacagtccaagaacacatagttttgtaagagataataaatttgttcgtgatgatgcaaggtcagcacatagctaacacaatggcccttcccgacatggt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214155 |
acacagtccaagaacacatagttttgtaagagataataaatttgttcgtgatgatgcaaggtcagcacatagctaacacaatggcccttcccgacatggt |
2214056 |
T |
|
| Q |
310 |
gatctcaacaagaaacacaagtctagagataagcaaactcaactgaaaagattggagacgccaccaaagtgcagacatataaaataagtatggtacataa |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2214055 |
gatctcaacaagaaacacaagtctagagataagcaaactcaactgaaaagattggagacgccaccaaagtgcagacatataaaataaatatggtacataa |
2213956 |
T |
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| Q |
410 |
annnnnnnatcgtatcaacgttctcatattgatacataaaaaattattccgcatatatagtcgaaacgggcacatttc |
487 |
Q |
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| T |
2213955 |
atttttttatcgtatcaactttctcatattgatacataaaaaattattccgcatatatagtcgaaacgggcacatttc |
2213878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 564 - 926
Target Start/End: Complemental strand, 2213800 - 2213450
Alignment:
| Q |
564 |
tatatattgacataccacaatacatgtatgaaatcacataaggttcatataattctcatnnnnnnnn-ctcatcctttatataacactgctaaaacacag |
662 |
Q |
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| T |
2213800 |
tatatattgacatatcacaatacatgcatgaaatcacataaggttcatataattctcataaaaaaaaactcatcctttatataacactgctaaaacacag |
2213701 |
T |
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| Q |
663 |
ctattttacagaatcaaaacttgagcaaatccaaatctcatgcttgatgagaattaatgatttgtgtttttcttttgttgttgtagtggtatgcaatata |
762 |
Q |
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| T |
2213700 |
ctattttacacaatcaaaact-----------------catgcttgatgagaattaatgatttgtgtttttcttttgttgttgtagtggtatgcaatata |
2213618 |
T |
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| Q |
763 |
aggtggattatactttgtcaagttgtgttgggaagtgtggaa----aaagtggagcttgaactgaatcaaacttgtgctaatcgtaaggaatttgatatc |
858 |
Q |
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| T |
2213617 |
aggtggattatactttgtcaagttgtgttgggaagtgtggaaggaaaaagtggagcttgagctgaatcaaacttgtgctaatcgtaaggaatttgatatc |
2213518 |
T |
|
| Q |
859 |
ggctctgatgatcctaaaaatcctaaatggtatgtagtgtgtgccaatgatatcaacacacgtatatt |
926 |
Q |
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| T |
2213517 |
ggctctgatgatcctaaaaatcctaaatggtatgtagtgtgtgccaatgatatcaacacacgtatatt |
2213450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 924 - 1020
Target Start/End: Complemental strand, 2213417 - 2213317
Alignment:
| Q |
924 |
attgacaaacacagaaacatat----ctaaacatcaaatttaatatttttaatcactcattgactaaacaaaaccattcgttgatctttattgctttgac |
1019 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
2213417 |
attgacaaacacagaaacatatatatctaaacatcaaatttaatatttttaatcactcattgagtaaataaaaccattcgttgatctttattgctttgac |
2213318 |
T |
|
| Q |
1020 |
a |
1020 |
Q |
| |
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| T |
2213317 |
a |
2213317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 769 - 875
Target Start/End: Complemental strand, 2204290 - 2204184
Alignment:
| Q |
769 |
attatactttgtcaagttgtgttgggaagtgtggaaaaagtggagcttgaactgaatcaaacttgtgctaatcgtaaggaatttgatatcggctctgatg |
868 |
Q |
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|||||| ||||||||||||| ||||||||||| ||||||||||||||||| | ||||| |||||||| || || |||||||||| |||||||||| |
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| T |
2204290 |
attataatttgtcaagttgtattgggaagtgttgaaaaagtggagcttgagtttcatcaatcttgtgcttcccgaaatgaatttgatactggctctgatg |
2204191 |
T |
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| Q |
869 |
atcctaa |
875 |
Q |
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||||||| |
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| T |
2204190 |
atcctaa |
2204184 |
T |
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