View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_high_104 (Length: 297)

Name: NF2519_high_104
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_high_104
NF2519_high_104
[»] chr8 (5 HSPs)
chr8 (98-279)||(10894936-10895119)
chr8 (205-279)||(4930618-4930692)
chr8 (153-287)||(16250818-16250957)
chr8 (233-279)||(4930553-4930599)
chr8 (1-41)||(10895176-10895216)
[»] chr4 (5 HSPs)
chr4 (120-279)||(13922814-13922979)
chr4 (147-279)||(17461417-17461549)
chr4 (1-41)||(13922695-13922735)
chr4 (233-279)||(13922998-13923044)
chr4 (120-237)||(17461283-17461403)
[»] chr6 (4 HSPs)
chr6 (125-279)||(15883075-15883235)
chr6 (122-279)||(15654477-15654634)
chr6 (234-279)||(15883255-15883300)
chr6 (1-41)||(15882952-15882992)
[»] chr2 (2 HSPs)
chr2 (120-226)||(31300281-31300388)
chr2 (182-226)||(27556041-27556085)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 10895119 - 10894936
Alignment:
Q  98 ctacaatagaatataaaattggtcagtttaaatgaaaaaa-cgtcaacggtagacttatcaaataaa-attcttaatttttctcttggtacataaacctt 195  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| |  ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  10895119 ctacaatagaatataaaattggtcagtttaaacgaaaaaaacgtcagcaatagacttatcaaataaacatgcttaatttttctcttggtacataaacctt 10895020  T
Q  196 cttcaagtcacataattagatctatgtgataacttgttagaacttgagttttatatgatgaacttgcgtatttggacaacatac 279  Q
    |||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  10895019 cttcaagttacataattagatcaatgtgataatttgttagaacttgagtttcatatgatgaacttgcatatttggacaacatac 10894936  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 4930692 - 4930618
Alignment:
Q  205 acataattagatctatgtgataacttgttagaacttgagttttatatgatgaacttgcgtatttggacaacatac 279  Q
    |||| |||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||    
T  4930692 acatgattagatctatgtgataactcgttagaacttgagtttcatatgacgatcttgcgtatttggacaacatac 4930618  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 16250957 - 16250818
Alignment:
Q  153 tatcaaataaa-attcttaatttttctcttggtacataaaccttcttcaagtcacataattagatctatgtgataacttgtta----gaacttgagtttt 247  Q
    ||||||||||| ||||| ||||||||||||| ||||||||| ||| | || | |  | |||||||||||| ||||| ||||||    ||||||| || |     
T  16250957 tatcaaataaacattctcaatttttctcttgatacataaacattcataaaattatgtgattagatctatgagataagttgttaattagaacttgcgtatc 16250858  T
Q  248 atatgatgaacttgcgtatttggacaacatacgtgatgat 287  Q
    ||| |||||||||   |||||||||||||||| |||||||    
T  16250857 ataggatgaacttatatatttggacaacatacatgatgat 16250818  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 4930599 - 4930553
Alignment:
Q  233 tagaacttgagttttatatgatgaacttgcgtatttggacaacatac 279  Q
    |||||||||||||| |||||| || |||||||||||||| |||||||    
T  4930599 tagaacttgagtttcatatgacgatcttgcgtatttggaaaacatac 4930553  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10895216 - 10895176
Alignment:
Q  1 catacaatgagtgaaaacgggaatcaaacgcacaaacatcg 41  Q
    |||| |||||||||||||||||| ||||| |||||||||||    
T  10895216 cataaaatgagtgaaaacgggaaccaaactcacaaacatcg 10895176  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 13922814 - 13922979
Alignment:
Q  120 tcagtttaaatgaaaaaacgtcaacggtagacttatcaaataaa-attcttaatttttctcttggtacataaaccttcttcaag-----tcacataatta 213  Q
    |||| ||||||| ||||||| ||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||||     | |||| ||||    
T  13922814 tcagcttaaatgtaaaaacgccaacaataaacttatcaaataaacattcttaatttttctcttggtacataaaccttcttcaagttacattacatgatta 13922913  T
Q  214 gatctatgtgataacttgttagaacttgagttttatatgatgaacttgcgtatttggacaacatac 279  Q
    |||||||| ||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||    
T  13922914 gatctatgcgataactcgttagaacttgagtttcatatgacgatcttgcgtatttggacaacatac 13922979  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 17461417 - 17461549
Alignment:
Q  147 tagacttatcaaataaa-attcttaatttttctcttggtacataaaccttcttcaagtcacataattagatctatgtgataacttgttagaacttgagtt 245  Q
    ||||||||||||||| | ||| | ||||||| ||||||||||| ||| |||||||||| || | |||||||||||||||||| | |||||||| ||||||    
T  17461417 tagacttatcaaatacacattatcaattttt-tcttggtacattaacattcttcaagttacgtgattagatctatgtgataagtcgttagaacatgagtt 17461515  T
Q  246 ttatatgatgaacttgcgtatttggacaacatac 279  Q
    |  || ||| |||||| ||||||| |||||||||    
T  17461516 tcttaggataaacttgtgtatttgaacaacatac 17461549  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13922695 - 13922735
Alignment:
Q  1 catacaatgagtgaaaacgggaatcaaacgcacaaacatcg 41  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  13922695 catagaatgagtgaaaacgggaataaaacgcacaaacatcg 13922735  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 13922998 - 13923044
Alignment:
Q  233 tagaacttgagttttatatgatgaacttgcgtatttggacaacatac 279  Q
    |||||||||||||| |||||| || |||||||||||||| |||||||    
T  13922998 tagaacttgagtttcatatgacgatcttgcgtatttggaaaacatac 13923044  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 17461283 - 17461403
Alignment:
Q  120 tcagtttaaatgaaaa--aacgtcaacggtagacttatcaaata-aaattcttaa-tttttctcttggtacataaaccttcttcaagtcacataattaga 215  Q
    |||||||| |||||||  |||| | || |||||||||||||||| | ||| | || ||||| |||||||||||||| ||||||||||| || | ||||||    
T  17461283 tcagtttagatgaaaagaaacgcctacagtagacttatcaaatacacattatcaattttttttcttggtacataaatcttcttcaagttacgtgattaga 17461382  T
Q  216 tctatgtgataacttgttagaa 237  Q
    |||| ||||||| | |||||||    
T  17461383 tcta-gtgataagtcgttagaa 17461403  T

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Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 125 - 279
Target Start/End: Original strand, 15883075 - 15883235
Alignment:
Q  125 ttaaatgaaaaaacgtcaacggtagacttatcaaataaa-attcttaatttttctcttggtacataaaccttcttcaag-----tcacataattagatct 218  Q
    ||||||| ||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     | |||| |||||||||    
T  15883075 ttaaatgtaaaaacgccaacaatagacttatcaaataaacattcttaatttttctcttggtacataaaccttcttcaagttacattacatgattagatct 15883174  T
Q  219 atgtgataacttgttagaacttgagttttatatgatgaacttgcgtatttggacaacatac 279  Q
    | ||||||||| |||||||||||||||| |||||| || ||| | ||||||||||||||||    
T  15883175 acgtgataactcgttagaacttgagtttcatatgacgatcttacatatttggacaacatac 15883235  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 15654634 - 15654477
Alignment:
Q  122 agtttaaatgaaaaaacgtcaacggtagacttatcaaataaa-attcttaatttttctcttggtacataaaccttcttcaagtcacataattagatctat 220  Q
    |||||| ||||||||||  ||||  ||||||||||||||||  ||| | ||||||||||||| ||||||||| |||||||||| || | |||||||||||    
T  15654634 agtttagatgaaaaaacaccaacaatagacttatcaaataaggattatcaatttttctcttg-tacataaacattcttcaagttacgtgattagatctat 15654536  T
Q  221 gtgataacttgttagaacttgagttttatatgatgaacttgcgtatttggacaacatac 279  Q
    | ||||| | |||||||| ||| |    ||  || |||||||||||||| |||||||||    
T  15654535 gcgataagtcgttagaacatgaataccttagcataaacttgcgtatttgaacaacatac 15654477  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 15883255 - 15883300
Alignment:
Q  234 agaacttgagttttatatgatgaacttgcgtatttggacaacatac 279  Q
    ||||||||||||| |||||| || ||||||||||||||||||||||    
T  15883255 agaacttgagtttcatatgacgatcttgcgtatttggacaacatac 15883300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15882952 - 15882992
Alignment:
Q  1 catacaatgagtgaaaacgggaatcaaacgcacaaacatcg 41  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  15882952 catagaatgagtgaaaacgggaataaaacgcacaaacatcg 15882992  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 31300388 - 31300281
Alignment:
Q  120 tcagtttaaatgaaaaaacgtcaacggtagacttatcaaataaa-attcttaatttttctcttggtacataaaccttcttcaagtcacataattagatct 218  Q
    ||||| |||||||||||||| |||   || |||||||||||| | ||||| |||||||||||||||| |||||| |||||||||| || | ||||||| |    
T  31300388 tcagtctaaatgaaaaaacgccaaaaatatacttatcaaatacacattctcaatttttctcttggtatataaacattcttcaagtaacgtgattagatat 31300289  T
Q  219 atgtgata 226  Q
    ||||||||    
T  31300288 atgtgata 31300281  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 27556085 - 27556041
Alignment:
Q  182 ggtacataaaccttcttcaagtcacataattagatctatgtgata 226  Q
    ||||||||||| ||||||||| ||||| |||||||||||| ||||    
T  27556085 ggtacataaacattcttcaagccacatgattagatctatgcgata 27556041  T

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