View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_105 (Length: 296)
Name: NF2519_high_105
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_105 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 385937 - 386205
Alignment:
| Q |
17 |
atgttgctgccaaagttctacttgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggt |
116 |
Q |
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| T |
385937 |
atgttgctgccaaagttctacttgaaatgaagacgatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggt |
386036 |
T |
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| Q |
117 |
tgatcttgctttgaggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386037 |
tgatcttgctttgaggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatggg |
386136 |
T |
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| Q |
217 |
atatacgagtcagccaagccacttcttgaaacatatgttaactccgctgcaaaagttgatttgattctt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
386137 |
atatacgagtcagccaagccacttcttgaaacatatgttaactccgctgcaaaagttgatttcattctt |
386205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 38729605 - 38729341
Alignment:
| Q |
17 |
atgttgctgccaaagttctacttgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38729605 |
atgttgctgccaaagttctacttgaaatgaagacaatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcagt |
38729506 |
T |
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| Q |
117 |
tgatcttgctttgaggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatggg |
216 |
Q |
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|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||||| |||||||| |||||| |
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| T |
38729505 |
cgatcttgctttgagatggctacgtttcatgggttcctcagggatcagaaccaataattttataatcaggcagttgtttgagtcgtgcatgaaaaatggg |
38729406 |
T |
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| Q |
217 |
atatacgagtcagccaagccacttcttgaaacatatgttaactccgctgcaaaagttgatttgat |
281 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38729405 |
atatacgaatcagccaagcctcttcttgaaacatatgtgaactccgctgcaaaagttgatttgat |
38729341 |
T |
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