View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_11 (Length: 549)
Name: NF2519_high_11
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 39267083 - 39267611
Alignment:
| Q |
1 |
atctcctggattagaaattagcagcaatgagcaatgctataccgtctagaattgaaaataaagnnnnnnnnnngcctaataagttaaattgtaaggagta |
100 |
Q |
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| T |
39267083 |
atctcctggattagaaattagcagcaatgagcaatgctataccgtctagaattgaaaaaaaagaaaaaaaa--gcctaataagttaaattgtaaggagta |
39267180 |
T |
|
| Q |
101 |
gtggttggcattacctgaagtacaccaaaccagcgtaacttggtcaaatcaagtccataagttaaattaccgcggccatggaaatacccacctatgaata |
200 |
Q |
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| T |
39267181 |
ccggttggcattacctgaagtacaccaaaccagcgtaacttggtcaaatcaagtccataagttaaattaccgcggccatggaaatacccacctatgaata |
39267280 |
T |
|
| Q |
201 |
agtttgagaaagaaaaattaaagcaatagcacacacatacagatagtacatgatgagatcataccttgtagcaagaggcccaaaagaaaaagcttaatcg |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39267281 |
agtttgagaaagaaacattaaagcaatagcacacacatacagatagtacatgatgagatcataccttgtagcaagaggcccaaaagaaaaagcttaatcg |
39267380 |
T |
|
| Q |
301 |
tcctcaaaatgatcttttttgtggcattttgtttgctagagactttctgaaaggctatcgaagaattagaatattgttgagaattccaagataaggcaat |
400 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39267381 |
tcctcgaaattatcttttttgtggcattttgtttgctagagactttctgaaaggctatcgaagaattagaatattgttgagaattccaagataaggcaat |
39267480 |
T |
|
| Q |
401 |
agaaggattgaaaagaagaagttgtaccttgaagaccaaaccaatggaaacgccaaccccaaagagnnnnnnnggcattacaaaatccgcaagtgtgact |
500 |
Q |
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|| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39267481 |
agcaggattgaa---aagaagttgtaccttgaagaccaaagcgatggaaacgccaaccccaaagagaaaaaaaggcattacaaaatccgcaagtgtgact |
39267577 |
T |
|
| Q |
501 |
ccaaaccatggagaatgattcaaggatgggaaag |
534 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39267578 |
ccaaaccatggagaatgattcaaggatgggaaag |
39267611 |
T |
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