View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_110 (Length: 285)
Name: NF2519_high_110
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_110 |
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| [»] scaffold0223 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 50872707 - 50872848
Alignment:
| Q |
143 |
atgtatagagagagtgaagaaagaaacttactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaac |
242 |
Q |
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| T |
50872707 |
atgtatagagagagtgaagaaagaaacttactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaac |
50872806 |
T |
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| Q |
243 |
gagggacttttgatcttatatactgcctctctgctcctcctc |
284 |
Q |
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| T |
50872807 |
gagggacttttgatcttatatactgcctcactgctcctcctc |
50872848 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 50872577 - 50872640
Alignment:
| Q |
21 |
agtcctttgatatccatcaactgaagaacaagtttaggagtagcctctgccaaaaatacaaagt |
84 |
Q |
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| T |
50872577 |
agtcctttgatatccatcaactgaagaacaagtttaggagtagcctctgccaaaaatacaaagt |
50872640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 21326 - 21415
Alignment:
| Q |
171 |
tactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaacgagggacttttgatctta |
260 |
Q |
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| T |
21326 |
tactttgatgaccaccaagagtttcaatggcataaacaaagcaacgatgaagttcaggtgtccatcttaaacgaggaacctttgatctta |
21415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 21183 - 21219
Alignment:
| Q |
32 |
atccatcaactgaagaacaagtttaggagtagcctct |
68 |
Q |
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| T |
21183 |
atccatcaactgaagaacaagtttaggagtagcctct |
21219 |
T |
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