View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_114 (Length: 278)
Name: NF2519_high_114
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_114 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 37479432 - 37479689
Alignment:
| Q |
16 |
ataattgttggaattaagttattagttttatatcatgtaagaatgactaaatgaatgatatataagagaagcgttggagcatagagcacatttgaaagag |
115 |
Q |
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| T |
37479432 |
ataattgttggaattaagttattagttttatatcatgtaagaatgaataaatgaatgatatataagataagcgttggagcatagagcacatttgaaagag |
37479531 |
T |
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| Q |
116 |
ttcacacaatactaggacatataaggtggaggtaggatacttagcgtgt---------tgggtatctgattttgtgatcaggaaaggacacactcaactt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
37479532 |
ttcacacaatactaggacatataaggtggaggtaggatacttagcgtgttcttctatatgaatatctgattttgtgatcaggaaaggacacactcaactt |
37479631 |
T |
|
| Q |
207 |
gaccaccacacatgttgcagctatttgacaagcccgagctgagtggtatttttattat |
264 |
Q |
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||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||||| |
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| T |
37479632 |
gaccaccacacgtgttgccgctatttgacaagctcgagctgtgtggtatttttattat |
37479689 |
T |
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