View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_high_116 (Length: 274)

Name: NF2519_high_116
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_high_116
NF2519_high_116
[»] chr8 (10 HSPs)
chr8 (13-256)||(1969278-1969521)
chr8 (32-256)||(2007519-2007743)
chr8 (34-252)||(2004141-2004359)
chr8 (41-256)||(2011143-2011358)
chr8 (40-256)||(1965336-1965552)
chr8 (41-256)||(2437078-2437287)
chr8 (60-256)||(1963666-1963862)
chr8 (41-196)||(2017931-2018086)
chr8 (125-196)||(2014632-2014703)
chr8 (90-127)||(23269096-23269133)
[»] chr1 (2 HSPs)
chr1 (40-252)||(5906330-5906542)
chr1 (40-256)||(5902842-5903058)
[»] chr4 (1 HSPs)
chr4 (56-127)||(5890603-5890674)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 1969521 - 1969278
Alignment:
Q  13 cagaaactaacacactaaggatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttcttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969521 cagaaactaacacactaaggatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttcttt 1969422  T
Q  113 gattgcatttgaagcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969421 gattgcatttgaagcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctct 1969322  T
Q  213 tctctttccacaatgccgttttcattaactcttggcctcagtcc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1969321 tctctttccacaatgccgttttcattaactcttggcctcagtcc 1969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 32 - 256
Target Start/End: Original strand, 2007519 - 2007743
Alignment:
Q  32 gatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagct 131  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2007519 gatttttaagtttttctacaccaaatttctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagct 2007618  T
Q  132 tcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgt 231  Q
    |||||||||||||||||||||||||| || |||||||| || |||||||||||||||  ||||||||||||| |||||||| | |||||||| ||||| |    
T  2007619 tcttttaattccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccat 2007718  T
Q  232 tttcattaactcttggcctcagtcc 256  Q
    |||||||||| |||| |||||||||    
T  2007719 tttcattaacacttgccctcagtcc 2007743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 2004141 - 2004359
Alignment:
Q  34 tttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttc 133  Q
    |||||| |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||  ||||| ||||||| |||    
T  2004141 tttttaggttttcctacactaaatttctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattc 2004240  T
Q  134 ttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttt 233  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||| | |||||||| ||||| |||    
T  2004241 ttttaattccttcatgttattgcgcaatttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattt 2004340  T
Q  234 tcattaactcttggcctca 252  Q
    |||||||| |||| |||||    
T  2004341 tcattaacacttgccctca 2004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 2011143 - 2011358
Alignment:
Q  41 gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat 140  Q
    ||||| || ||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||| |||||| |||||| |||||||||||    
T  2011143 gtttttctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttcttttaat 2011242  T
Q  141 tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaa 240  Q
    |||||||| |||||| |||| |||||||  ||||||||||||||||||||||||||||||||| |||||||  | ||||| ||||| || ||||| ||||    
T  2011243 tccttcatattattgtgcaatttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaataccattttcgttaa 2011342  T
Q  241 ctcttggcctcagtcc 256  Q
    ||||||||||||||||    
T  2011343 ctcttggcctcagtcc 2011358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 40 - 256
Target Start/End: Complemental strand, 1965552 - 1965336
Alignment:
Q  40 agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa 139  Q
    ||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||||||| ||||||||||||| |||||| |||||| || |||||||    
T  1965552 agttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaa 1965453  T
Q  140 ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta 239  Q
     |||||||| |||||| |||| |||||||  ||||||||||||||||||| ||||||||||||| |||||||  | ||||| ||||| |||||||| |||    
T  1965452 ctccttcatattattgtgcaatttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgttttcgtta 1965353  T
Q  240 actcttggcctcagtcc 256  Q
    |||||||| ||||||||    
T  1965352 actcttggtctcagtcc 1965336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 41 - 256
Target Start/End: Complemental strand, 2437287 - 2437078
Alignment:
Q  41 gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat 140  Q
    |||||||| ||||||  ||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||| |    
T  2437287 gttttcctgcaccaagcttctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttgagtgcattagaagcagcttcttttagt 2437188  T
Q  141 tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaa 240  Q
    || ||||   |||| | | ||||      |||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||||| ||||||| ||    
T  2437187 tctttca---tattactccactt---tagttcttctccttccatgagacacttgatcaccttagcaacctctaccctttccacaatgccattttcatgaa 2437094  T
Q  241 ctcttggcctcagtcc 256  Q
    ||||||||||||||||    
T  2437093 ctcttggcctcagtcc 2437078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 1963862 - 1963666
Alignment:
Q  60 ctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaattccttcatgttattgcgca 159  Q
    |||||||||||||||| |||||||| ||| ||||||| |||||||||||||||   | || |   |||||||||||| ||||||||||| ||||| ||||    
T  1963862 ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca 1963763  T
Q  160 acttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaactcttggcctcagtcc 256  Q
      ||| |||||||||| ||||||||||||| |||||||| || | |||  ||| | |||||||||||||| || || ||||||||||||||||||||    
T  1963762 gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcc 1963666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 2017931 - 2018086
Alignment:
Q  41 gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat 140  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||  || |||||| |||| ||||| |||||   |||| |   ||||| ||||||||||    
T  2017931 gtttttctataccaaatttctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatgtgcactattagcagattcttttaat 2018030  T
Q  141 tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgat 196  Q
    |||||||| || |||||||  ||| |||||||||| ||||||||||||| ||||||    
T  2018031 tccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgat 2018086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 2014632 - 2014703
Alignment:
Q  125 agcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgat 196  Q
    ||||| |||||||||||||||||| || |||||||  ||| |||||||||| ||||||||||||| ||||||    
T  2014632 agcagattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgat 2014703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 23269133 - 23269096
Alignment:
Q  90 tttgtagaagaaccatcttctttgattgcatttgaagc 127  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  23269133 tttgtagaagaaccatcttctttgagtgcattagaagc 23269096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 5906542 - 5906330
Alignment:
Q  40 agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa 139  Q
    ||||||| | |||||||||| |||||||| |||||| |||||||| ||| ||| ||||||| ||||||||||  | |||||| | ||| |||||||| ||    
T  5906542 agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaagtgcattagtagctgcttctttcaa 5906443  T
Q  140 ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta 239  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||  |||||||   |||||||||||||| |||||||||    
T  5906442 ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatcctttccacaatgccattttcatta 5906343  T
Q  240 actcttggcctca 252  Q
    |||||||||||||    
T  5906342 actcttggcctca 5906330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 40 - 256
Target Start/End: Complemental strand, 5903058 - 5902842
Alignment:
Q  40 agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa 139  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||| || ||| ||||||| || ||||||||||  ||||| | || ||||||||||||    
T  5903058 agttttcatgcaccaaatttctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgcattagtagaagcttcttttaa 5902959  T
Q  140 ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta 239  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||||||||  |||  ||  || || ||||| |||||||| || ||||||    
T  5902958 ttccttcatattattgcgcaaattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctccctttcaacaatgccattatcatta 5902859  T
Q  240 actcttggcctcagtcc 256  Q
    || ||||||||||||||    
T  5902858 acccttggcctcagtcc 5902842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 5890603 - 5890674
Alignment:
Q  56 atttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagc 127  Q
    |||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||| |||||| |||||    
T  5890603 atttctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttctttgagtgcattagaagc 5890674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University