View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_119 (Length: 269)
Name: NF2519_high_119
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_119 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 45410168 - 45409915
Alignment:
| Q |
1 |
aaatcccttgatgcatatataattgaaactcataccaaacatgattggatacctaagaatgctgatgcaaccggcaagaaatgccattccacagcaactt |
100 |
Q |
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| T |
45410168 |
aaatcccttgatgcatatataattgaaactcataccaaacatgattggatacctaagaatgctgatgcaaccggcaagaaatgccattgcacagcaactt |
45410069 |
T |
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| Q |
101 |
gtttcacagatggaaaaccctagaaaaggggtaagctagggggaaaacgtacaagcatccactgtctctcatatgtagctaaatgagtccatccaacttc |
200 |
Q |
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| T |
45410068 |
gtttcacagatggaaaaccctagaaaaggggtaagctagggggaaaacgtacaagcatccactgtctctcatatgtagctaaatgagtccatccaacttc |
45409969 |
T |
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| Q |
201 |
ttcaagcaaagagagctttagtttatatagtttcttcttcgcaggctcagtatc |
254 |
Q |
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| T |
45409968 |
ttcaagcaaagagagctttagtttatatagtttcttcttcgcaggctcagtatc |
45409915 |
T |
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Target: scaffold0025 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 48701 - 48572
Alignment:
| Q |
120 |
ctagaaaaggggtaagctagggggaaaacgtacaagcatccactgtctctcatatgtagctaaatgagtccatccaacttcttcaagcaaagagagcttt |
219 |
Q |
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|||||||||||| ||| | || || ||||| ||||||||||||||||| || ||||||||||||| ||||||||| || ||||| || ||||||||| |
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| T |
48701 |
ctagaaaaggggcaaggttggagggaaacgcacaagcatccactgtctttcgtatgtagctaaatatttccatccaatctcatcaagtaatgagagcttt |
48602 |
T |
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| Q |
220 |
agtttatatagtttcttcttcgcaggctca |
249 |
Q |
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| T |
48601 |
agctcatatagtttcttcttggcaggctca |
48572 |
T |
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