View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_126 (Length: 264)
Name: NF2519_high_126
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_126 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 47750979 - 47750739
Alignment:
| Q |
9 |
acatgaacatttgtagcataagctagacatccgaaaactctaaggtgggaataagagggaagtttttcataaagtttttcgaaaggagtttggtgagaaa |
108 |
Q |
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| T |
47750979 |
acatgaacatttgtagcataagctagacatccgaaaactctaaggtgggaataagagggaagtttttcataaagtttttcgaaaggagtttggtgagaaa |
47750880 |
T |
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| Q |
109 |
gtatggatgtgggcaacctattaattatatgaacagcagcggagacacattctgcccaaaagtttaaagggagatgcgattgaaaacgaagagctcgagc |
208 |
Q |
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| T |
47750879 |
gtatggatgtgggcaacctattaattatatgaacagcagcggagacacattctgcccaaaagtttaaagggagatgcgattgaaaacgaagagctcgagc |
47750780 |
T |
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| Q |
209 |
cgactcaaggatatgtctatgtttgcgctcaaccaccccat |
249 |
Q |
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| T |
47750779 |
cgactcaaggatatgtctatgtttgcgctcaaccaccccat |
47750739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 8001 - 7761
Alignment:
| Q |
9 |
acatgaacatttgtagcataagctagacatccgaaaactctaaggtgggaataagagggaagtttttcataaagtttttcgaaaggagtttggtgagaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
8001 |
acatgaacatttgtagcataagctagacatccgaaaactctaaggtgggaataagagggaagtttttcataaagttttttgaaaggagtttgatgagaaa |
7902 |
T |
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| Q |
109 |
gtatggatgtgggcaacctattaattatatgaacagcagcggagacacattctgcccaaaagtttaaagggagatgcgattgaaaacgaagagctcgagc |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7901 |
gtatgggtgtgggcaacctattaattatatgaacagcagcggagacacattctgcccaaaagtttaaagggagatgcgattgaaaacgcagagctcgagc |
7802 |
T |
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| Q |
209 |
cgactcaaggatatgtctatgtttgcgctcaaccaccccat |
249 |
Q |
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| T |
7801 |
cgactcaaggatatgtctatgtttgcgctcaaccaccccat |
7761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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